Protein

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Genbank accession
YP_453581.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,83
Protein sequence
MDSGLRIINDSGVVQIDSTYSNYYLHSKQVVTLAAVPGLSRVSQVTVAPPYPSQCLIALGGTAPVTIKGQTSNQVWIESSNDFIGSAVTVYYFVPANLSPLVGTGEGGLRVYGPTGSLVFDNSAKMVKILGYVPDANGSSGLDTGIAGQYAAVVLNDAYSITYNRVSGGGANNNSSWTQTVSRAYVQTTQTGLTFYGTAEVRGPFTASDNPPPNPVYIGPMSVLLVDVTNY
Physico‐chemical
properties
protein length:231 AA
molecular weight: 24222,81390 Da
isoelectric point:4,89545
aromaticity:0,09524
hydropathy:0,05801

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_453581.1
1 231
Domain Start End Length (AA) Confidence
N-terminal 1 99 99 0,2527
Central domain 100 220 122 0,0154
C-terminal 221 231 10 0,9969
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-99
Central
100-220
C-terminal
221-231

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage OP1
[NCBI] 		2994040 Uroviricota > Caudoviricetes > Xipdecavirus >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_453581.1 [NCBI]
Genbank nucleotide accession
NC_007709 [NCBI]
CDS location
range 19794 -> 20489
strand +
CDS
ATGGATTCAGGTCTTCGGATTATAAACGATTCGGGGGTTGTTCAGATTGACAGCACGTATTCTAACTACTACCTACATTCTAAGCAAGTTGTTACACTCGCGGCAGTACCGGGTCTTTCTAGAGTATCCCAAGTTACGGTTGCGCCTCCCTACCCAAGCCAGTGTCTTATAGCACTAGGTGGTACTGCCCCTGTGACAATTAAAGGCCAGACATCTAACCAGGTTTGGATAGAGTCATCAAATGATTTTATAGGCTCTGCTGTAACAGTTTATTACTTTGTCCCTGCAAATTTGTCCCCTCTTGTAGGTACGGGTGAAGGCGGTCTTCGGGTGTATGGTCCGACAGGGTCGCTGGTTTTTGACAACTCTGCAAAGATGGTTAAGATATTAGGTTATGTACCTGACGCTAACGGATCAAGCGGTTTAGACACGGGCATAGCTGGGCAGTATGCAGCAGTAGTTCTGAATGATGCATATTCAATAACATACAACCGCGTGTCAGGTGGAGGAGCAAATAACAACTCATCGTGGACTCAGACTGTTTCACGTGCTTATGTTCAGACAACACAGACGGGTCTAACTTTTTACGGTACAGCGGAAGTGCGTGGTCCATTCACTGCAAGTGATAACCCGCCACCTAATCCGGTATATATTGGACCTATGTCAGTTCTTCTTGTAGATGTGACGAATTATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f8358427492db6402ced1034cc85f1fb9303329b83a11a37142dc0276854749a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8849
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophage OP1, lytic for Xanthomonas oryzae pv. oryzae, changes its host range by duplication and deletion of the small domain in the deduced tail fiber gene Inoue,Y., Matsuura,T., Ohara,T. and Azegami,K. 2006 — GenBank