Protein

Genbank accession
AEC52967.1 [GenBank]
Protein name
collagen triple helix repeat protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,92
TF
Evidence Phold
Probability 1,00
Protein sequence
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
Physico‐chemical
properties
protein length:578 AA
molecular weight: 57272,50690 Da
isoelectric point:4,05003
aromaticity:0,07785
hydropathy:-0,86920

Domains

Domains [InterPro]
IPR008160
77–134
IPR008160 IPR050149
AEC52967.1
1 578
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-CRM01
[NCBI] 		1026955 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp.
[NCBI] 		1131 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AEC52967.1 [NCBI]
Genbank nucleotide accession
HQ615693 [NCBI]
CDS location
range 25264 -> 27000
strand +
CDS
ATGTCGCTCTTCAAAAAGACTAAAGTTATAGGTAGTTTAGGCATTTCCCCTACTATCACAAATAAGACAATATTTTCTGATGTAGAACCCACAGAAAGAGAAAATGGTGGAGATTTAAGATCTGGAGATCGTTGGGTCAATACTTTAGATAGTACAGAATCAGTCTGGAGTGAAGATATACTTCCAGATGGCGCCTGGATATTAATATCATCCAATTCGACAGAAACAGGGCCTCAAGGATTCCAGGGAGATCAGGGCCCCCAAGGTGTTGCAGGAAGTAATGGAACTCAAGGCCCACAAGGATTTCAAGGGGCCGATGGAATTAACGGAACTCAAGGTCCGCAAGGTTTTCAGGGCGCAAACGGAATTGACGGTACTCAAGGGCCTCAAGGAAATGCAGGAAGTAACGGAACTCAAGGTCCACAAGGATTTCAAGGTGTTGGGGGTAATAATGGATCTCAGGGCCCTCAAGGTTTTCAGGGAAATCAAGGATTAAGAGGATTTCAAGGTTTTCAAGGTGATATTGGTGCACAGGGCTCTAGAGGATTCCAGGGTGATCAGGGTCCGCAAGGATTTACTGGACTTCAAGGTTCACAAGGTGCACAAGGTTCACAAGGCCTTCGTGGTTTTCAAGGGTTTCAAGGAAACCAAGGAGACTCAGGTACTCAAGGCCCTAGAGGATTCCAAGGATTTCAAGGTGATACTGGACCTCAAGGTGTAACTGGCGTAGGTACTCAAGGCCCTAGAGGATTCCAAGGATTTCAAGGTGATACTGGACCTCAAGGAACTCAGGGAGTTGCGGGAAATACAGGAACTCAAGGACCCCAAGGATTTCAAGGGAATCAAGGTGTTGCTGGTTCTAACGGAACTCAAGGACCCCAAGGATTTCAAGGGAATCAAGGTGTTGCTGGTTCTAACGGAACTCAAGGACCCCAAGGATTTCAAGGGAATCAAGGTGTTGCTGGTTCTAACGGAACTCAAGGGCCCCAAGGTTTCCAAGGAAATGCAGGGAGTAACGGAACTCCAGGCCCCCAAGGATTTCAAGGTGTTGCTGGAAGTAATGGAACCCAAGGTCCCCAAGGATTTCAAGGAAATGCAGGAAGTAACGGAACTCAAGGTCCTCAAGGTTTCCAAGGAAATGCAGGCTCTCAAGGTCCCCAAGGATTTCAAGGAAATGCAGGAAGTAACGGAACTCAAGGTCCCCAAGGATTTCAAGGTGTTGCTGGAAGTAACGGAACTCAAGGTCCTCAAGGTTTCCAAGGAAATGCAGGAAGTAACGGAACTCAAGGTCCACAAGGATTTCAAGGGAATCAAGGTGCAACTGGTTCCGGTACTCAAGGACCACAAGGTGCTCCTGGTGTAGGAACACCAGGCCCTCAAGGTTTTCAAGGCCCTCAAGGTCCACAGGGAGGTGGTGGAGGGAGTGGATATGTTTATACATATTCAGATACAGAACCAACTAGTCCAAACCCAGGAGATGAATGGACAGATAGTTCTGATCCTAAATTACCAACTTATAGGTATATTGATGATGGTAATACTGCCCAATGGGTAGAATTAGTTGTAAGTGGTCAAGCTGGACCACAAGGTGATCAGGGCGATCCTGGAATTTTTACGGGAACACCTTCGTTTATACAATCAACACAACCAACTCTATTGGAGTTGAATGGAAATGATAAATACATTTGGTGGGATACATCTAACGGATTAACTCTTTGGATAGAGGACGGAACATAA

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
498a231f569f8765a858e4cc81fcde3f55efab2fd42f520aaec78126ec837530
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5894
Evidence 0,5894
Download PDB

Literature

No literature entries available.