Protein

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Genbank accession
YP_008240635.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MCKKTGCKEDLTVLNIKYSGQPLTCISIEEGNNLQTTFEKINDVICSLKNNINNSLTIKSIGSGLALYGGKNEQDEHQIKTIKQGPGIQISSTENAITISKTNLETRLSYDISTNTLSSTYTDGTTKSTIIDFSETLTTLNFDEITKVLTYVGEDGLAKTINLSAVFSETLTTLEEVAGDIVYTDEIGNETLVTLPKSTSDLTNDGEDGLNPFVISGSNVSLFVNDSGYLTSYTETDPVFEASPASSITSQDITNWNSSSSVPADQTIIDGSTNSVAGGPVFNALEDKLNIGFTDVGNTLVDIRSSFGFKFQETGSFTGLIIAGNSFSLTAGEDDNSEITSLFLDSVSLASTVTNQQIIDKGETSLVTLGLADARYAAIGSGGTVDFDDVPTDGSIKAVRSNGVFDALAAKVNSTGSKTITGQTIFTDSASFNSGVFVQSGGAFVSQGAFSLQGISTETYLDIQNGLIVRDENLVNKYTFQNDGSATISTDVLTKGEADSTYALIGSGGSGTVDQTIIDGSSSAVSGNAVFDGLALKPNLAGTNNFTGTAYWTGNVFANVLSSRYHQVTNTPLPTNTDNGSSSSGVLRAGDQNGEMVWLGHTAAMIFDNSLITSARTYTMPNKSGTVAMTSDIVENTSGTWTPVVTTTGSASYTYNTSVTGGIWTKVGKTVTFKCTVVINSKSGTPTGSALQITGFPFASKTIGGYSAVNPVPIHHTKFLDVAGTVTGALSGSTFLFFQPDLSNAGEILPVNYSALRGSASGALTLYGTIIVD
Physico‐chemical
properties
protein length:773 AA
molecular weight: 80895,36670 Da
isoelectric point:4,37174
aromaticity:0,07633
hydropathy:-0,05847

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008240635.1
1 773
Domain Start End Length (AA) Confidence
N-terminal 1 440 440 0,9890
Central domain 441 639 200 0,1629
C-terminal 640 773 133 0,9983
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-440
Central
441-639
C-terminal
640-773

Taxonomy

  Name Taxonomy ID Lineage
Phage Cellulophaga phage phi4:1
[NCBI] 		1328029 Uroviricota > Caudoviricetes > Lightbulbvirus >
Host Cellulophaga baltica
[NCBI] 		76594 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota
Host Cellulophaga baltica 4
[NCBI] 		1348582 Bacteria > Bacteroidetes > Flavobacteriia > Flavobacteriales > Flavobacteriaceae > Cellulophaga

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008240635.1 [NCBI]
Genbank nucleotide accession
NC_021788 [NCBI]
CDS location
range 52464 -> 54785
strand -
CDS
ATGTGTAAAAAAACAGGATGTAAAGAAGATTTAACTGTACTTAATATCAAGTACAGTGGACAGCCTTTAACATGCATTTCAATAGAAGAAGGGAACAACTTACAAACTACTTTTGAAAAAATAAATGATGTTATATGTTCATTAAAAAATAATATAAATAATAGTTTGACTATAAAATCAATAGGGTCAGGATTAGCTTTATATGGAGGGAAAAATGAGCAAGATGAGCACCAAATAAAAACTATAAAACAAGGGCCAGGAATACAGATTTCAAGTACTGAGAATGCTATTACAATAAGTAAGACTAACTTAGAAACTAGATTGTCTTATGATATTAGTACTAACACTTTAAGTTCTACTTATACTGACGGGACAACTAAATCTACAATAATAGATTTTTCTGAGACTTTAACCACTTTAAATTTTGACGAAATAACTAAGGTCTTAACTTATGTGGGGGAAGATGGCTTAGCAAAAACTATAAATTTATCAGCAGTTTTTTCTGAAACACTAACTACTTTAGAAGAAGTAGCAGGAGATATAGTTTATACTGATGAAATTGGAAACGAGACTCTTGTGACTCTCCCTAAAAGTACAAGTGATTTAACTAATGATGGAGAAGACGGCCTTAATCCTTTTGTAATCTCAGGAAGTAATGTTTCATTATTTGTGAATGACTCTGGGTACCTTACAAGCTACACAGAGACAGACCCTGTTTTTGAAGCTTCTCCTGCATCAAGTATCACAAGTCAAGACATAACAAACTGGAACTCCTCTTCAAGTGTACCAGCAGATCAAACTATTATAGACGGAAGTACTAATTCAGTAGCAGGAGGGCCAGTATTTAACGCCTTGGAAGATAAATTAAATATAGGATTTACAGACGTAGGTAATACCTTAGTTGATATCAGATCCTCTTTTGGATTTAAGTTCCAAGAAACAGGTAGCTTTACTGGATTAATAATAGCAGGTAACTCTTTTTCTTTAACAGCAGGAGAGGACGACAACTCAGAAATAACTTCATTGTTTTTAGATTCTGTTAGTTTGGCCTCTACTGTAACAAACCAACAGATTATAGATAAAGGAGAAACATCTCTTGTAACTTTAGGACTTGCTGATGCTAGATATGCTGCTATCGGTTCTGGAGGTACTGTTGATTTTGATGATGTCCCTACAGATGGCAGCATTAAGGCCGTAAGAAGTAACGGAGTATTTGATGCATTAGCTGCTAAAGTTAACAGTACAGGATCAAAAACTATAACAGGCCAAACAATATTTACGGACAGTGCAAGTTTCAATTCTGGAGTATTTGTGCAAAGTGGAGGAGCCTTTGTAAGTCAAGGGGCTTTTAGCCTTCAAGGGATATCAACTGAAACATACCTAGATATTCAAAATGGTCTTATCGTAAGAGATGAGAACCTAGTAAATAAATATACTTTTCAAAATGATGGCTCAGCTACGATAAGTACAGACGTGTTAACTAAAGGAGAAGCTGATTCTACATATGCCCTTATTGGCTCAGGAGGTAGTGGTACAGTAGACCAAACAATTATAGATGGTTCAAGTAGCGCTGTAAGTGGTAATGCTGTTTTTGATGGTCTTGCACTTAAACCTAATTTAGCAGGAACTAACAACTTTACTGGTACGGCTTATTGGACTGGTAATGTATTTGCAAACGTACTATCATCTAGGTATCACCAAGTAACAAATACACCTTTACCAACAAATACAGACAACGGAAGTAGCTCTAGTGGAGTATTAAGAGCAGGAGATCAAAATGGAGAAATGGTTTGGTTAGGGCATACAGCTGCAATGATTTTTGATAATAGCCTTATTACTTCAGCAAGAACATACACAATGCCTAATAAGTCAGGAACTGTAGCAATGACTAGTGATATAGTAGAAAATACGTCAGGTACATGGACACCAGTTGTTACAACAACAGGTTCTGCTAGCTATACTTACAATACATCAGTTACAGGAGGTATCTGGACTAAAGTAGGTAAGACTGTTACGTTTAAATGCACTGTAGTTATCAATAGTAAATCAGGAACTCCAACTGGTTCTGCGTTACAAATTACAGGCTTTCCTTTTGCATCAAAAACAATAGGAGGTTATAGTGCAGTAAACCCTGTTCCAATTCATCACACAAAATTTCTTGATGTAGCAGGAACAGTTACAGGAGCTTTATCGGGATCAACATTTTTATTTTTCCAACCTGATTTATCGAATGCAGGAGAAATACTACCTGTTAACTATTCAGCATTAAGAGGATCGGCAAGTGGTGCTTTAACTTTATATGGAACAATAATAGTAGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
912e23049d2317e042e5ebba3691f89329bbe652103ddc321ebf37d38df9e2b1
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3024
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50