Protein

View in Explore
Genbank accession
YP_010094125.1 [GenBank]
Protein name
tail fiber protein proximal subunit
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,64
Protein sequence
MADSIKRKFRGAEGFDAAGEKIVNVATADRTVLSDGVNVEFLIQENTLQQYDETRGYTSGFAVIYDNRIWVSNRDIAKPAGAFNELFWNSVRTDAKWRVVSSGTTTLKSGEFISVDTNKGNDMVFTLPSNPQDGDTIMLKDIGNKTGTVGVVINASVQDIVLRDPANKVRSVRMTHPLSQYVFVFSNRLWNLYVSDYARYARIVTPSVVVQAQSNDFIVRRYTSPGPIRVTLPKFANTGDIINFTDLDGKNPQFHMIVSTFDDNTNIGTVGQKSVEVRTSGDGFIVYDASESIWRIWEGDLRPRMRVITDNVTLIPNDVVTVFGVNNITQKTIDITLPTDIAVGDTVTIAMNYMRKGQKVNIIAAAGDKIASSLQLLQFPKRSEYPPDAAWVMNDSLTFDGTTSYVPVLQLSYIENAGSKYWIVADNAPTVERVDSKDNETRKRLGVIALASQAQANVDYENNPEKELAITPETLANRIATKIRRGIARLVTLTEIQAPTSGPHLDDVIVTPAMLNEKTATEERRGVAETATQAEANGSTDDERIVTPKKLHNRIASETLTGILKLVRTVGTAAGIGRDTKGTNIYDYDNNIDAVTPKSLFQFKSTEQAQGGVYLATQNEVIAGGPAQPGFPVVVTPQTLHGKTSTDSRIGLIQIAKQAEVDAGTDYTKAVTPKTLNDRKAREDLSGIAEIATQTEFDSGTDDTRIVTPLKVKTRFNSTDRTSVVALSGLVEQGTLWDHYTLDIKEASETQRGTAALATQVQVDAGTDDKTIVTPKKLQAKKATETTEGIIQVANQTETVAGTIATKAVSPKNLKYIAQEEKTWESTIARRGFVKLSEKALTFKGDATNGSGRLLPGDLINEPALTDLPKDGYAVSPYEMNRALQYFLPAKAKAVDSDLLDGIDSTQFVRRDIDQVVNGKITFKKDVVLEAPLVSSSTAKFTTVNATISVDIGDTLGNSRINLNTLANGWNIETLANGSTLDFTAADKVLTLNRNGNVTVAQTLTAMNKVDASKGFSVEGGTMVINPSSSEIVIGTQSKQVTLQNKDAKTFSVVDPSGTYTILNTKNAFEITAQGFVKKAGDSMTGQLQISAPLTVQIPEGKVQPDVKPSDENPASWSASITSAIVYNKLPGFGVPVMEKNDQGQDTGFVDHYEYVKGPGVLSQHGIGKTAVYQIWAPRPDAAALNHNAQTFWIRNFNIVTNDWDEWGKMYTSVQRPTAGEIGAVSTSGSAFNNLTIRDWLQIKNVRIVPNETTRTVDFIWVDE
Physico‐chemical
properties
protein length:1264 AA
molecular weight: 137767,18870 Da
isoelectric point:5,48243
aromaticity:0,07041
hydropathy:-0,30032

Domains

Domains [InterPro]
DC_1986
ATT
12–138
DC_1986 DC_1209
IPR048391
ATT
1116–1211
IPR048391
YP_010094125.1
1 1264
Architecture
ATT
STR
ATT
STR
ATT 12-138 | STR 345-1115 | ATT 1116-1211 | STR 1212-1254 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010094125.1
1 1264
Domain Start End Length (AA) Confidence
N-terminal 1 937 937 0,9597
Central domain 938 1136 200 0,3294
C-terminal 1137 1264 127 0,3915
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-937
Central
938-1136
C-terminal
1137-1264

Taxonomy

  Name Taxonomy ID Lineage
Phage Enterobacter phage myPSH1140
[NCBI] 		2108137 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Karamvirus
Host Enterobacter cloacae
[NCBI] 		550 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010094125.1 [NCBI]
Genbank nucleotide accession
NC_055739 [NCBI]
CDS location
range 156558 -> 160352
strand +
CDS
ATGGCAGATTCAATCAAACGCAAGTTTCGTGGCGCTGAAGGCTTCGATGCTGCGGGTGAAAAAATAGTCAACGTTGCTACTGCTGACCGCACGGTGTTATCCGATGGCGTCAACGTTGAATTCCTTATCCAAGAAAACACATTACAACAATATGATGAAACACGTGGCTACACTTCTGGCTTCGCAGTAATTTACGACAACCGTATTTGGGTTTCAAATCGTGATATTGCAAAACCTGCCGGTGCATTCAACGAACTTTTCTGGAACTCAGTACGTACTGATGCTAAGTGGCGAGTAGTTTCAAGTGGAACAACTACTCTGAAATCAGGTGAATTCATTTCAGTCGACACCAACAAAGGTAACGACATGGTATTCACTCTGCCAAGTAATCCACAGGACGGCGATACAATTATGCTGAAGGATATCGGGAACAAAACCGGTACCGTTGGCGTAGTTATCAACGCATCAGTACAAGATATTGTTCTGCGAGACCCAGCAAATAAAGTTCGTTCTGTTCGTATGACTCATCCACTGTCCCAGTATGTGTTTGTGTTTAGCAACAGATTGTGGAACCTTTACGTTTCAGATTACGCTCGTTATGCTCGCATTGTAACACCAAGCGTAGTTGTACAAGCTCAATCAAATGACTTTATCGTTCGTCGTTATACTTCTCCAGGCCCAATTCGTGTAACTTTACCTAAGTTTGCGAATACCGGAGATATTATCAACTTTACTGACCTTGATGGAAAGAACCCTCAATTCCACATGATTGTTAGTACTTTCGATGATAATACTAACATCGGTACTGTTGGTCAAAAATCAGTAGAAGTTCGTACTTCAGGTGATGGTTTCATTGTATACGATGCTTCAGAATCTATCTGGAGAATTTGGGAAGGCGACTTACGCCCACGCATGCGTGTAATCACTGACAACGTAACGTTAATTCCAAATGACGTTGTTACTGTTTTTGGTGTAAATAACATTACCCAGAAAACTATTGACATCACTTTGCCTACTGATATTGCTGTTGGTGATACTGTCACTATCGCAATGAATTATATGCGCAAAGGCCAGAAGGTAAATATCATCGCTGCAGCTGGAGACAAAATTGCTTCAAGTCTTCAATTGCTTCAATTCCCTAAACGCTCAGAGTATCCACCTGATGCTGCATGGGTAATGAATGATTCATTAACTTTCGATGGAACTACTTCTTACGTTCCAGTACTTCAGTTGTCTTATATCGAAAATGCTGGTTCAAAATACTGGATTGTAGCAGATAATGCTCCGACAGTAGAACGAGTTGATTCAAAAGATAATGAAACGCGTAAGCGTCTTGGTGTTATTGCTCTTGCTTCTCAAGCTCAAGCTAATGTTGATTATGAAAATAATCCAGAGAAAGAATTAGCAATTACCCCAGAGACTTTAGCAAACCGTATCGCTACTAAGATTCGTCGCGGTATTGCTCGTCTAGTTACACTGACTGAAATTCAGGCTCCAACTTCTGGTCCGCATCTGGATGATGTTATTGTTACTCCAGCTATGCTGAATGAAAAAACAGCTACTGAAGAAAGACGCGGTGTTGCTGAAACTGCTACTCAAGCTGAAGCAAATGGTTCAACTGATGATGAAAGAATTGTTACTCCGAAGAAGCTGCATAACCGTATTGCTTCTGAGACGTTGACTGGTATTCTTAAATTAGTAAGAACTGTTGGGACTGCGGCGGGTATTGGACGAGATACGAAAGGTACTAACATTTATGACTATGATAACAACATTGATGCGGTAACTCCAAAATCACTGTTCCAATTCAAGTCTACTGAGCAAGCTCAGGGCGGTGTTTATCTTGCTACTCAAAACGAAGTAATTGCTGGTGGTCCAGCACAACCTGGTTTCCCAGTCGTTGTTACTCCGCAAACGCTTCATGGCAAAACTTCAACTGATTCAAGAATCGGTTTGATTCAAATTGCTAAACAAGCTGAAGTAGATGCTGGTACAGATTATACAAAAGCAGTTACTCCTAAAACTCTGAACGACCGCAAGGCTCGTGAAGATTTAAGTGGTATTGCTGAAATTGCAACTCAAACTGAATTTGATAGCGGAACGGACGATACACGTATCGTAACTCCATTAAAGGTTAAAACTCGTTTCAATTCAACCGATAGAACATCTGTTGTTGCTCTGTCTGGATTAGTTGAGCAAGGAACCTTGTGGGACCATTATACATTAGATATCAAAGAAGCATCTGAGACTCAGCGCGGCACCGCTGCTCTGGCTACTCAAGTACAAGTTGATGCTGGTACTGATGACAAGACGATTGTTACGCCTAAGAAATTACAAGCTAAGAAAGCAACTGAGACTACTGAAGGTATTATCCAAGTTGCTAACCAAACTGAAACTGTAGCAGGTACCATAGCTACTAAAGCAGTTTCTCCGAAGAACTTGAAGTATATTGCTCAAGAAGAAAAGACTTGGGAATCTACTATAGCTCGTCGTGGTTTCGTTAAATTATCAGAAAAAGCACTTACCTTTAAAGGTGATGCTACTAATGGTTCTGGCCGTCTGCTTCCAGGTGACTTAATCAATGAACCTGCTTTAACTGATTTGCCTAAAGACGGTTATGCAGTATCTCCATACGAGATGAACCGTGCACTGCAATACTTCTTACCGGCTAAAGCGAAAGCTGTTGATTCTGATTTGCTGGATGGAATTGATTCAACTCAATTCGTCCGTCGTGATATTGACCAAGTAGTTAATGGCAAAATTACGTTCAAAAAGGATGTTGTATTAGAAGCTCCTCTGGTGTCCTCTAGTACGGCCAAGTTCACTACCGTGAATGCTACTATATCTGTTGATATTGGTGACACCCTGGGTAATTCTAGAATCAATTTGAATACTCTGGCGAATGGTTGGAACATCGAAACGCTAGCGAATGGTTCAACTCTTGATTTTACTGCTGCAGATAAAGTTCTGACGCTTAATCGTAATGGAAACGTAACGGTTGCTCAGACTCTGACAGCAATGAACAAAGTTGATGCTAGTAAGGGCTTTTCAGTTGAAGGTGGTACAATGGTTATCAATCCTTCCTCTTCTGAAATTGTCATTGGTACTCAATCTAAGCAAGTAACATTGCAGAACAAAGATGCTAAGACATTCTCAGTTGTAGACCCTTCTGGTACTTACACCATTCTGAACACCAAGAATGCTTTTGAAATAACGGCTCAAGGATTCGTTAAGAAAGCAGGTGATTCAATGACTGGGCAGCTGCAGATTTCTGCTCCATTAACAGTTCAAATTCCTGAAGGCAAGGTTCAACCAGATGTTAAACCATCTGATGAAAACCCAGCTTCATGGTCTGCATCAATTACTTCAGCTATTGTTTACAATAAGCTTCCAGGTTTTGGTGTTCCTGTTATGGAAAAGAATGACCAAGGGCAAGATACTGGTTTCGTAGACCACTACGAATATGTTAAAGGACCTGGTGTATTATCTCAGCATGGTATTGGTAAAACTGCGGTTTACCAGATTTGGGCACCACGCCCAGATGCAGCTGCATTGAACCATAATGCCCAGACTTTCTGGATTCGTAACTTCAACATTGTAACTAATGATTGGGACGAATGGGGTAAAATGTACACCTCAGTTCAGAGACCTACTGCAGGGGAAATTGGTGCTGTATCAACTTCAGGTTCAGCTTTCAATAACTTGACAATTCGCGATTGGTTACAAATTAAGAACGTTCGTATTGTTCCTAATGAAACTACTCGTACTGTTGACTTCATTTGGGTTGATGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a984cc983c3e55046932e981c4c087964756da7236c7988a8e192a79ebf86518
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5412
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, characterization and genome analysis of lytic bacteriophages against Enterobacter cloacae Ramesh,N., Prasanth,M., Tamhankar,A.J. and Lundborg,C.S. 2018-06-21 — GenBank