Protein

View in Explore
Genbank accession
YAB58067.1 [GenBank]
Protein name
pre-neck appendage protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MQLFTMPVELGQEFRKVTIINFRDIVFEINKGKVALNDHKNKDKVAHKSKQISHFDKDLETILINFKKRLESHIIGANGDGIAELTDSRVSRDGKRFNIFNDRIDYEFQQTEKLFEQKYKEVYGLATRLRNVNDFGADPTGEKDSTEAFEKAFENGGYHVHMTEGTYKVRGIKLPSNSILSGEGKGVTTIKMNDDAPQENIVITNRDVDGTAKNITVKDFSINGNKFRQEGTLKAAGGSRSSNLRYAGVTNGYIYNIESYDALLHGIDVTYASDDYFYEGDNVRVEEQLESNFIHIDNCETYGFGDDGITTHHSKFLNITNNYSHHPTGGGNNNGIEIDDGSRYVMLSGNTTKQNFGGLEIKAHGTATAPSGVFVNNHLSIEDTRSYNVRHIGHHRAATDVKSKSAHDVVLNNITSIYPYANNTYENVTPRALVISAYDGVVCNNVTCIGDGRFQAGQPAIAVQFMSQNIVISNVNITGFKNAMADMKVFGGNNGGNKIKFANVNIHDSSVNIGIAGGAGVEGFGIYNANLTGSGKGNGIELYNHYAEIVGVDAVNYEYAADIAGNKYEVVPTYMNGGASIASTGGGAISERSVVLASSNGTFAYDKNSFVIASNMGSEAYGSRSGVINSSNSRTKKDGFAQTIMNSRSVESLGNYHFQMGYGEDEKPKASNTKFDVSAFSGNVRTAGYLKSGQDIGDIGEYFESKTGEKIENGYIVTLEGRYIRKAGPDDEPVGIVSGTAALVMGDQLFHHKSKYKKDEFGVVIKSVQMVENVDDEGNIHRELVELPVVNEDYDNQNEEDYIPRSQRDEWCVVGINGQIYTRIDETVENGDKITAMRGVGTKDNANGYYYVEEITTPYDAEKGYGVALVFVK
Physico‐chemical
properties
protein length:873 AA
molecular weight: 95788,83540 Da
isoelectric point:5,41041
aromaticity:0,09393
hydropathy:-0,50080

Domains

Domains [InterPro]
DC_0125
ATT
1–239
DC_0125 IPR006626 IPR006626 IPR006626 IPR006626 DC_0616 IPR021865
IPR012334
STR
124–575
IPR012334 G3DSA:2.160.10.20 G3DSA:2.40.300.10
IPR011050
STR
128–449
IPR011050 IPR006626 IPR006626 G3DSA:4.10.80.40
IPR024535
ENZ
130–358
IPR024535
IPR006626
Unmapped
212–248
IPR006626
YAB58067.1
1 873
Architecture
ATT
STR
RBD
ATT 1-239 | STR 240-642 | RBD 643-873
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YAB58067.1
1 873
Domain Start End Length (AA) Confidence
N-terminal 1 144 144 0,9900
Central domain 145 654 511 0,9891
C-terminal 655 873 218 0,9101
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-144
Central
145-654
C-terminal
655-873

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage Undine
[NCBI] 		3446833 Viruses >
Host Staphylococcus epidermidis
[NCBI] 		1282 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YAB58067.1 [NCBI]
Genbank nucleotide accession
PV956271 [NCBI]
CDS location
range 18806 -> 21427
strand +
CDS
ATGCAACTATTCACTATGCCCGTTGAATTGGGGCAAGAATTTAGAAAGGTAACCATTATTAATTTTAGAGATATTGTTTTCGAAATTAATAAAGGTAAGGTCGCGTTAAACGATCATAAAAACAAAGACAAAGTGGCACATAAAAGTAAACAAATTTCCCACTTTGACAAAGATTTAGAAACAATTTTAATCAATTTCAAAAAACGATTAGAGTCTCACATCATAGGTGCAAATGGCGACGGTATAGCAGAGCTTACTGATAGCCGAGTATCTAGGGACGGAAAAAGATTTAATATTTTCAATGACCGTATTGATTACGAATTCCAGCAAACGGAAAAGTTATTCGAACAAAAGTATAAAGAAGTCTATGGTTTGGCTACTCGTCTAAGAAATGTAAATGACTTTGGTGCTGATCCAACAGGAGAAAAAGATAGTACAGAAGCATTTGAAAAAGCGTTCGAAAACGGTGGCTATCATGTACATATGACTGAAGGTACTTATAAAGTAAGAGGTATTAAATTGCCTAGTAACTCAATTTTAAGTGGGGAAGGCAAAGGCGTTACAACTATTAAAATGAATGATGACGCCCCTCAAGAAAATATTGTCATTACAAATAGAGATGTAGACGGAACAGCTAAAAACATCACTGTTAAAGACTTTAGTATCAATGGTAATAAGTTCAGACAAGAAGGCACATTAAAAGCTGCTGGCGGCTCACGTTCAAGTAACTTACGCTATGCAGGTGTTACTAATGGATATATTTATAACATCGAAAGTTATGACGCACTATTACATGGTATAGACGTTACATACGCGTCTGATGATTACTTCTATGAAGGAGATAACGTACGTGTTGAGGAGCAATTAGAAAGTAACTTCATTCATATCGACAACTGCGAAACGTACGGTTTCGGAGACGACGGTATTACAACACACCACTCTAAATTCTTAAATATCACAAACAACTATTCACACCACCCTACAGGTGGAGGTAATAATAACGGTATCGAAATAGATGACGGTTCAAGATATGTGATGTTAAGTGGTAATACAACAAAACAAAACTTTGGTGGACTTGAAATAAAAGCGCATGGTACAGCTACAGCGCCAAGTGGCGTGTTTGTTAATAACCATTTATCTATTGAAGATACAAGAAGCTATAACGTTAGACACATAGGACATCACAGAGCCGCAACAGATGTTAAGAGTAAATCAGCTCATGACGTTGTACTTAATAACATTACATCTATTTATCCATACGCAAACAATACATATGAAAATGTTACGCCTAGAGCGTTAGTTATTAGTGCTTATGACGGTGTCGTATGTAACAACGTAACATGCATAGGCGACGGACGTTTCCAAGCAGGCCAACCAGCAATAGCAGTTCAATTTATGAGCCAAAACATTGTCATTAGTAACGTGAACATCACAGGCTTCAAAAACGCTATGGCAGACATGAAAGTATTCGGTGGCAATAACGGTGGTAATAAAATCAAGTTTGCTAACGTTAACATTCACGACTCATCTGTGAATATTGGTATTGCAGGTGGTGCAGGCGTCGAAGGCTTTGGTATTTATAACGCTAACTTAACTGGATCCGGTAAAGGTAACGGAATAGAACTATACAACCACTACGCAGAAATTGTAGGTGTTGACGCAGTTAACTATGAATACGCAGCAGACATCGCCGGCAACAAATACGAAGTAGTGCCAACATATATGAATGGTGGCGCAAGTATAGCTTCAACAGGTGGCGGTGCAATTTCTGAACGAAGTGTCGTTTTAGCTTCTAGTAATGGAACATTCGCATATGACAAAAACTCATTTGTTATTGCGTCTAATATGGGATCAGAGGCTTACGGATCACGTTCAGGTGTTATTAATTCATCTAATTCAAGAACTAAAAAAGATGGTTTCGCACAAACGATCATGAACTCAAGAAGTGTCGAGTCCTTAGGTAATTATCATTTCCAAATGGGTTATGGCGAAGATGAAAAACCTAAAGCCTCAAACACTAAATTCGATGTATCGGCATTTAGCGGTAATGTAAGAACAGCAGGATATTTAAAATCAGGCCAAGACATCGGGGATATTGGCGAGTATTTTGAAAGCAAAACTGGAGAGAAAATCGAAAACGGTTATATTGTAACCTTAGAAGGTCGTTACATTAGAAAAGCCGGTCCAGATGATGAGCCGGTAGGTATTGTTTCAGGTACAGCCGCATTAGTTATGGGGGATCAATTATTCCACCATAAATCTAAATATAAAAAAGACGAATTCGGTGTTGTTATAAAATCTGTTCAAATGGTTGAAAATGTAGATGATGAAGGAAACATACACCGCGAACTTGTAGAGTTACCAGTCGTTAATGAAGATTACGACAATCAAAACGAAGAAGATTACATTCCTAGATCACAACGAGATGAATGGTGCGTTGTTGGTATCAATGGTCAAATTTATACAAGAATAGATGAAACTGTTGAAAACGGCGACAAAATAACTGCCATGAGAGGTGTAGGAACAAAAGACAATGCTAATGGCTATTATTACGTCGAAGAAATCACTACACCATACGACGCAGAAAAAGGTTACGGAGTAGCATTAGTATTCGTTAAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
31095af0b84ddafaca6165bb315d05a47164198717faa272f11ef50b0dfa4941
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,9075
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Sequences of Staphylococcus epidermidis siphophages Cicami, Sazerac, Slasher, Southeast, Spartan, and Undine Gonzalez,K., Qavi,Y., Hill,C., Aslan,B. and Hatoum-Aslan,A. 2022-06-20 — GenBank