Protein

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Genbank accession
YP_009838140.1 [GenBank]
Protein name
pre-neck appendage protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MIKFNQLETLNKCLIDWNVNYSVYPYNGYTINEVLCQFFDAINKGIITINEYTKMISAIMNWIKDEGLKEEVENALDKMVEEGTFDDIINEKLLGDIMERLDEIENINNEQNKAIEKNTNAIAEIDKLVKSYGFVTVNMFGAKGDGETDDTKAFNDAINYCKERNITSLFIPYGNYLTTGLINATGVNLVGMYKPVIPFLEWEYTRPTSQLDHFEKYFKMCKGSVIGSKDNTIFVGGLDCKNIGLFGNRRKENQSGYLQLEGGYGKGVNMTDCFVSGFGGAGVKADYGLISSQFINTTITQCGKEGLYIGKVKGSYTGETNFLTIERCSIYRNESHGILADVMGRGFNIILNDFEFNGEPSDPQRPKPTSVDDMVFGCKLLVSGNGGFSSGAIKFEGNYTEETLGMLYIKNTGGTCQGVDINCNMAYPYNTTEMENIGIYLDGWLDRINISNNNMYFAKKLVLNGNQIQSIRTDIEPIHGGDTTGSVAWQVTTENGYNKIVMNSLYEEELFSKNGFITREGYHEDGITHYPFDKSDTHINGVEIDYDDARNPMVGKILILDGNYVGYVHSVSWTQGVINIRGNRVISRTNGNVKFVDCGGFITRDGTGTKRKMVVDWDGTVVGI
Physico‐chemical
properties
protein length:624 AA
molecular weight: 69677,76440 Da
isoelectric point:4,87749
aromaticity:0,10737
hydropathy:-0,32724

Domains

Domains [InterPro]
DC_0396
ATT
1–195
DC_0396 DC_0525
Coil
Unmapped
90–124
Coil IPR011050
IPR024535
ENZ
134–191
IPR024535
IPR012334
STR
135–516
IPR012334
YP_009838140.1
1 624
Architecture
ATT
STR
RBD
ATT 1-195 | STR 196-516 | RBD 517-624
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009838140.1
1 624
Domain Start End Length (AA) Confidence
N-terminal 1 147 147 0,9840
Central domain 148 543 397 0,9505
C-terminal 544 624 80 0,9190
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-147
Central
148-543
C-terminal
544-624

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage CPS2
[NCBI] 		2175605 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Clostridium perfringens ATCC 13124
[NCBI] 		195103 Bacillota > Clostridia > Eubacteriales > Clostridiaceae > Clostridium > Clostridium perfringens

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009838140.1 [NCBI]
Genbank nucleotide accession
NC_048707 [NCBI]
CDS location
range 10628 -> 12502
strand +
CDS
ATGATTAAATTTAATCAACTTGAAACATTAAACAAATGTCTTATAGACTGGAATGTTAACTATTCTGTCTATCCATATAATGGTTACACAATTAACGAAGTCTTATGTCAGTTTTTCGACGCAATTAATAAGGGAATAATAACAATTAATGAGTACACTAAAATGATAAGTGCAATCATGAATTGGATTAAAGACGAAGGATTAAAAGAAGAGGTCGAAAATGCACTCGACAAAATGGTAGAGGAAGGAACTTTCGACGACATCATAAATGAAAAACTTTTAGGCGACATCATGGAAAGATTAGACGAGATAGAAAACATTAATAATGAACAGAATAAAGCAATAGAAAAAAATACTAACGCCATAGCAGAAATTGACAAACTTGTCAAGTCTTACGGTTTCGTTACTGTCAATATGTTTGGAGCAAAAGGAGACGGAGAAACAGACGACACAAAGGCTTTTAATGACGCCATAAATTATTGTAAAGAAAGAAACATTACAAGCTTGTTTATTCCATATGGAAATTACTTGACAACTGGTTTAATAAATGCTACAGGGGTTAACTTAGTTGGGATGTATAAACCTGTTATTCCTTTCTTAGAATGGGAATACACAAGACCAACATCACAACTTGACCATTTCGAGAAATACTTTAAGATGTGTAAAGGTTCTGTTATTGGTTCAAAAGATAACACAATATTTGTAGGCGGTTTAGACTGTAAGAATATAGGACTTTTTGGTAATAGAAGAAAAGAAAATCAAAGTGGATATTTACAACTAGAAGGTGGTTACGGAAAAGGTGTAAATATGACCGATTGTTTTGTTAGTGGTTTTGGTGGTGCAGGCGTTAAAGCCGACTATGGATTAATCAGTTCACAATTCATTAACACTACTATAACTCAATGCGGTAAAGAGGGTTTATATATTGGTAAGGTAAAGGGTTCTTATACAGGTGAAACAAACTTTTTAACCATAGAACGTTGTTCTATATATAGAAATGAAAGTCATGGAATATTGGCAGACGTCATGGGGCGTGGTTTCAACATAATATTAAATGACTTTGAGTTTAATGGTGAACCGTCCGACCCTCAAAGACCTAAGCCAACATCTGTTGACGACATGGTTTTTGGTTGTAAATTACTGGTGAGCGGTAATGGTGGATTTTCAAGCGGAGCAATAAAGTTTGAAGGTAACTATACAGAGGAAACTCTAGGTATGTTATACATTAAGAATACTGGTGGAACTTGCCAGGGTGTTGACATTAATTGTAATATGGCATATCCTTATAACACTACAGAAATGGAAAACATCGGAATTTATTTAGATGGTTGGTTAGATAGAATTAACATATCAAATAATAATATGTATTTCGCTAAAAAGTTAGTTTTAAATGGAAACCAAATTCAGTCAATAAGAACAGACATAGAACCAATACATGGTGGTGATACTACTGGGAGTGTAGCATGGCAAGTAACTACAGAAAATGGATATAACAAAATCGTAATGAATAGTTTATATGAAGAAGAACTATTTAGCAAAAATGGTTTCATAACTAGAGAAGGTTACCACGAAGACGGTATCACACATTATCCATTCGATAAATCAGACACTCATATAAATGGTGTAGAAATTGATTACGACGACGCACGTAATCCAATGGTTGGTAAAATCTTAATACTAGACGGAAATTATGTCGGTTACGTTCACTCAGTTTCATGGACACAAGGTGTTATCAACATACGTGGTAATAGAGTTATCTCACGTACTAATGGTAATGTTAAGTTTGTAGATTGTGGAGGGTTCATCACTAGAGACGGGACAGGAACAAAAAGAAAAATGGTTGTCGACTGGGACGGTACAGTAGTTGGAATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3d2a4925ed369ecab06c9ed31566c1576e191a466c7b2995f441ea19a174eca9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6797
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50