Protein

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Genbank accession
URQ03502.1 [GenBank]
Protein name
tail fibers protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,86
TF
Evidence RBPdetect2
Probability 0,92
Protein sequence
MAKLGPTNIFGTLNVSSMTQVGSLVVDTELFAQNTQKVFHDAYHPNADKWTTARTLNLSGDASGSVSWDGSSDVTLNVTVADDSHTHDTRYVQKAGDTMTGVLKTPRLQSVIITDLDTYGDDSGYSFGYAQSSANGTPIGQDHAVLTQSYSASWKTQLASDWRTNNWFVRNQNNGTWGSWSQIFTDAYHPNADKWTNARTLTLSGDLSGSVSIDGSSNVTLTASVANDSHTHTWIVVDDTRDTPITPNTLVARSVSAQFTNLDRPSSFSNWYSALSVNGWDSGYQAWQLLGGSNNYSDNELYFRRGLTTSWSSTQRIFMDDYHPNADRWTTSRTLTLNGDASGSVSIDGSSNVTLSVAVKNDSHTHDGRYYTESESNSRYVYKSGDTMTGELKLKAGSHPGASIKALDGGVNGTNLIVSSGGNTVIASGETTAANAVSAGNTSENLHLGSDDTLYMYTNAQSWGSRKTFTLSSGGNFTAPGNITAYSDIRIKTDIKRILNPLEKIDSLNGYTYERTDIDGPRQTGVIAQEVIEVLPEAVVEQNNMYSVSYGNMVGLLIEGIKEEKRKREELEKRLESLEKLLK
Physico‐chemical
properties
protein length:583 AA
molecular weight: 63499,64470 Da
isoelectric point:5,14952
aromaticity:0,08576
hydropathy:-0,51921

Domains

Domains [InterPro]
DC_1451
STR
5–181
DC_1451 DC_1451
IPR005601
STR
34–77
IPR005601 cd19958 IPR005601 IPR030392
IPR005601
STR
158–220
IPR005601 IPR030392 Coil
URQ03502.1
1 583
Architecture
STR
STR
STR 5-220 | STR 225-582 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
URQ03502.1
1 583
Domain Start End Length (AA) Confidence
N-terminal 1 55 55 0,4332
Central domain 56 254 200 0,1334
C-terminal 255 583 328 0,8223
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-55
Central
56-254
C-terminal
255-583

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage PVA23
[NCBI] 		2938950 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio sp.
[NCBI] 		678 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
URQ03502.1 [NCBI]
Genbank nucleotide accession
ON190025.1 [NCBI]
CDS location
range 63211 -> 64962
strand -
CDS
ATGGCAAAATTAGGTCCTACTAACATTTTCGGTACGTTGAACGTATCGTCAATGACACAGGTCGGAAGTCTAGTTGTTGATACTGAGCTTTTTGCACAAAACACGCAAAAGGTGTTTCATGATGCCTATCACCCAAATGCAGACAAATGGACTACCGCTCGTACGTTGAATTTAAGCGGCGACGCGAGTGGTAGCGTCTCATGGGATGGTAGCTCGGATGTTACATTAAACGTCACAGTAGCAGACGACTCGCATACTCACGATACTAGATACGTACAAAAAGCTGGTGATACAATGACAGGGGTTTTAAAAACCCCTAGATTGCAAAGTGTCATAATAACCGACCTTGACACTTATGGTGATGATAGTGGGTATTCTTTCGGTTACGCTCAATCATCGGCGAATGGAACTCCGATAGGACAAGACCATGCAGTATTGACACAATCTTATAGTGCATCGTGGAAAACTCAATTAGCATCCGACTGGCGAACTAACAATTGGTTTGTTCGTAATCAAAATAACGGTACGTGGGGTTCTTGGTCACAGATCTTTACTGATGCCTATCACCCAAATGCAGACAAATGGACTAATGCACGAACATTGACATTGAGCGGTGATTTGAGCGGTTCAGTATCTATTGACGGTAGTTCGAACGTTACGTTAACTGCATCTGTAGCAAATGATTCACACACGCATACGTGGATTGTTGTTGACGATACTCGCGATACACCGATTACACCGAATACACTTGTGGCTCGATCAGTATCTGCACAGTTTACAAACTTAGACAGACCGAGCAGTTTTTCGAATTGGTATTCTGCGTTATCTGTGAACGGCTGGGATTCTGGTTATCAAGCATGGCAATTACTTGGTGGTAGTAACAATTATTCTGATAACGAGCTGTATTTCCGTCGTGGCTTGACAACTTCTTGGAGTAGTACACAGCGCATTTTCATGGACGATTATCACCCAAATGCAGACCGATGGACAACTTCTCGTACGCTGACGTTGAACGGTGATGCAAGTGGTTCAGTTTCAATTGACGGTAGTTCGAATGTGACTTTAAGCGTCGCGGTTAAAAACGATTCTCATACTCACGACGGTCGTTATTACACAGAATCAGAATCGAATTCAAGATATGTGTATAAGTCTGGCGATACGATGACAGGTGAATTGAAACTAAAAGCAGGTTCACACCCTGGAGCGTCGATTAAAGCATTAGATGGTGGTGTGAACGGTACGAACTTGATTGTATCGTCAGGTGGTAACACTGTAATTGCATCGGGCGAGACGACTGCGGCAAATGCTGTTTCGGCTGGCAATACGAGTGAAAACTTACACTTAGGTTCTGATGATACGCTTTACATGTATACTAATGCACAGTCGTGGGGCAGTCGGAAGACGTTTACATTATCTTCGGGTGGTAATTTTACCGCGCCGGGTAATATTACTGCGTATTCTGATATAAGAATAAAAACTGATATCAAGCGCATTCTAAACCCACTTGAAAAAATTGACAGCCTGAATGGTTATACGTATGAGCGTACTGATATTGACGGGCCTCGTCAAACTGGTGTGATTGCTCAAGAAGTTATTGAAGTTCTACCAGAAGCAGTTGTCGAGCAAAACAACATGTATTCTGTTTCATACGGGAACATGGTTGGTTTGTTGATCGAAGGTATTAAAGAAGAGAAACGAAAACGCGAAGAACTTGAAAAACGTCTAGAAAGTCTAGAAAAACTACTTAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
cec2f64d9f912497e006e05f337e7124e52cf10fc2544107c09d4917eccdcb9b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6894
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of a bacteriophage and its application for the inhibition of Vibrio alginolyticus in shrimp farming He,Z. 2024 — GenBank