Protein

View in Explore
Genbank accession
BDD79842.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
Protein sequence
MTAILGAIATQNKGVTLDPSLYTFGAPTPFADPQGVTNTSMLITVAEVTAPYQGAQTVYYTRLQLSDLAALLPQPIQANGLSKVSDFWPILNANFGLNFVPGDLNDNDPITVGSDGSGSVTLIAQSGSLGWIGQVTMSFVAGNYDLATVMTGTALNGLMYPNQDLTKPFGELYSYWRDMTAWQNDLLQINTSTSDLSTLTADLKACTGDNWINTAAGRFSLQGAAVVYNGPVVAFTPIAGTVMTPNTNYTYVLVIQLGSGSLGYGGYLFLHYGAIDPYANSDGATVNTSMLLHFNGINGAKVMRDNAYPSRAFIFNADAMIGSSQSLYGGSSAQFDGTGNMQTIDSAELQLSADFTVEMFIRPSDVTTPQTLLAKGTGGKLTVDSGAIKAYDDAGNFLNAGTVVLGQWLHVALVKKTGTTTLYVGGVAVAQSPSFGTFGVNAGNLSIGSMVDSSVGYTGWIDELRISKVARYSANFTVPTDPFVVD
Physico‐chemical
properties
protein length:486 AA
molecular weight: 51155,88240 Da
isoelectric point:4,36833
aromaticity:0,10082
hydropathy:0,12305

Domains

Domains [InterPro]
IPR057701
STR
4–272
IPR057701 IPR013320
IPR057701
STR
4–285
IPR057701 G3DSA:2.60.120.200
DC_2085
STR
268–480
DC_2085
PF13385
LEC
337–471
PF13385
IPR006558
LEC
353–474
IPR006558
BDD79842.1
1 486
Architecture
STR
STR 4-480 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Burkholderia phage FLC9
[NCBI] 		2906467 No lineage information
Host Burkholderia glumae
[NCBI] 		337 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BDD79842.1 [NCBI]
Genbank nucleotide accession
LC667451.1 [NCBI]
CDS location
range 255230 -> 256690
strand -
CDS
ATGACTGCGATTCTGGGTGCTATCGCCACGCAAAACAAGGGCGTCACGCTGGACCCGAGTCTGTACACCTTTGGTGCGCCGACTCCGTTCGCTGATCCCCAAGGCGTGACGAACACCTCGATGCTCATTACGGTGGCCGAGGTCACCGCGCCCTATCAGGGAGCGCAGACAGTCTACTACACGCGGTTGCAGTTGAGTGATCTGGCGGCGCTGTTGCCGCAACCGATTCAGGCTAACGGTCTGAGTAAGGTGTCGGACTTTTGGCCGATCCTCAATGCCAACTTTGGTTTGAACTTTGTCCCCGGCGACCTGAACGATAACGACCCGATCACGGTCGGTAGCGATGGCTCGGGTAGCGTCACGCTGATAGCTCAGTCGGGCTCACTCGGCTGGATCGGTCAGGTCACGATGAGTTTCGTGGCAGGTAACTACGATCTGGCGACGGTGATGACGGGGACAGCCCTGAACGGTCTGATGTATCCCAATCAGGATCTCACCAAGCCGTTCGGTGAACTGTACTCGTACTGGCGTGACATGACGGCGTGGCAGAACGATCTCTTGCAGATCAATACGTCGACGTCGGATCTCAGCACGCTCACGGCAGACCTGAAAGCTTGCACGGGGGACAACTGGATCAATACGGCTGCCGGACGTTTCAGCCTGCAAGGCGCCGCAGTGGTCTATAATGGCCCCGTGGTGGCCTTCACGCCGATTGCCGGTACGGTGATGACCCCCAACACGAATTATACCTACGTGCTGGTTATCCAGCTGGGGTCGGGTTCGTTGGGTTACGGCGGTTATCTGTTCTTGCATTACGGCGCGATCGACCCGTACGCTAACTCAGATGGTGCCACGGTGAACACCTCGATGCTGCTGCATTTTAACGGCATCAACGGTGCGAAGGTGATGCGCGACAATGCGTATCCCAGCCGGGCGTTCATCTTCAATGCTGACGCCATGATTGGTAGCAGCCAGTCGCTTTATGGTGGCTCCTCGGCACAGTTCGACGGTACGGGCAACATGCAGACCATCGATTCGGCCGAACTGCAACTGTCGGCGGACTTCACGGTCGAGATGTTTATCCGTCCGTCGGATGTTACCACGCCGCAAACGCTGCTTGCGAAGGGCACGGGCGGTAAGCTGACGGTCGATAGTGGGGCCATCAAAGCGTACGACGACGCGGGTAACTTCCTCAATGCTGGCACGGTGGTGCTGGGCCAGTGGCTACATGTGGCGCTGGTGAAGAAGACCGGTACAACGACGCTGTACGTGGGCGGTGTGGCGGTGGCACAGAGCCCGAGCTTCGGCACCTTTGGCGTGAATGCAGGCAATCTGTCGATTGGTTCGATGGTCGATAGCAGTGTCGGCTACACGGGCTGGATTGATGAACTGCGAATCAGCAAGGTGGCTCGTTACTCAGCCAACTTCACTGTTCCGACCGATCCGTTCGTGGTCGACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
805d3cecd746c8858d344436795bd91bfae3895ecefe66b89f445ec4d1240d7f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7115
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Optimal preservation method of new biocontrol agent Burkholderia jumbophages having a potential suppressing rice seedling rot disease Kanaizuka,A., Sasaki,R., Miyashita,S., Ando,S. and Takahashi,H. 2022-11-19 — GenBank