Protein

View in Explore
Genbank accession
ADO99810.1 [GenBank]
Protein name
YadA domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,86
Protein sequence
MATRKISDLTLLGVDQVSSSDTLLLLDNSDPTDQNKRSAVGSIFTAVPSGTYTAPGVRFEGKTATGVFSETQGQVGLAMGNARLNLQKVGTTLNIQARDDADTNLDFTISAQGTGKIRLGSILAVNDLNFIVPNSIDETKVAKFSSSNLVAGITNIYSFPPNTDADANFTDELVTLKAAQTIENKTIVSPSFSGSVAMVDFATTGNATIGNEASDSLTVNAGSIFSASATFANTLIAQQSLTLTGDLIANSHIDMVDDKIIKLGTDDDLQIVYSNGTDASTITDTSTNGLTISSADVELASGSNKFFKASTTDTVIYHNNATRVTTTATGININGAIDAVTSITGSGDIAIATNKFTLDSANGNAVFGGNITGGGDITASSGTAFQLGSSSSAKLGVGRAAATYNLEVEGDIYSTGSTIIAGNGSVGKFILQKGAAAIGIHFTNNVGTDEAVIDASGRFGIGKTPAKKLDVSGDAGIDGDITIVTTNPTNNTGGKISARELVLTDPSTGATTTLNAISGGGGLSRGKVFFLSN
Physico‐chemical
properties
protein length:533 AA
molecular weight: 54293,37100 Da
isoelectric point:4,52725
aromaticity:0,05253
hydropathy:0,01388

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ADO99810.1
1 533
Domain Start End Length (AA) Confidence
N-terminal 1 133 133 0,4964
Central domain 134 332 200 0,1279
C-terminal 333 533 200 0,8961
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-133
Central
134-332
C-terminal
333-533

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-HM2
[NCBI] 		445696 Uroviricota > Caudoviricetes > Eurybiavirus >
Host Prochlorococcus marinus subsp. pastoris str. CCMP1986
[NCBI] 		59919 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus > Prochlorococcus marinus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ADO99810.1 [NCBI]
Genbank nucleotide accession
GU075905 [NCBI]
CDS location
range 20298 -> 21899
strand +
CDS
GTGGCAACTCGTAAGATATCTGACCTTACATTGTTAGGAGTAGATCAAGTATCATCATCTGATACTCTACTGTTACTAGATAACTCAGACCCAACCGATCAAAATAAAAGATCCGCAGTAGGAAGTATTTTTACTGCAGTTCCGTCTGGAACATACACAGCACCTGGCGTTCGTTTTGAAGGCAAGACTGCTACTGGTGTATTTTCTGAGACTCAGGGACAGGTTGGTCTTGCTATGGGAAATGCGAGATTAAACTTACAAAAAGTTGGAACTACTCTTAACATACAGGCAAGAGACGATGCTGATACTAACCTAGACTTTACTATATCTGCACAGGGTACTGGTAAAATACGTCTAGGTTCTATTTTGGCAGTTAATGACCTTAACTTTATCGTACCTAACTCTATTGATGAGACAAAGGTAGCAAAGTTTAGTTCATCTAACTTAGTTGCGGGTATTACTAACATCTATTCTTTCCCTCCTAACACAGATGCGGATGCGAATTTCACTGATGAATTAGTAACACTTAAAGCTGCACAGACTATAGAGAACAAGACTATTGTATCTCCCAGTTTTTCTGGTAGTGTTGCAATGGTTGATTTTGCTACTACTGGTAACGCAACTATTGGTAATGAAGCGTCTGACAGTTTAACTGTTAATGCAGGGTCAATATTTTCTGCATCTGCAACGTTCGCTAACACTTTGATCGCACAACAATCACTTACCTTAACAGGTGATTTGATTGCTAACAGTCATATTGATATGGTTGATGATAAGATTATTAAGTTAGGAACTGATGATGACCTTCAAATTGTATACAGCAATGGTACAGATGCATCAACAATAACAGATACATCTACAAATGGTTTAACTATTAGTAGTGCTGATGTTGAACTTGCTTCTGGTTCTAATAAGTTCTTTAAGGCAAGCACAACAGATACTGTCATTTATCATAACAACGCAACTCGTGTAACAACGACTGCAACAGGTATAAACATTAACGGAGCTATTGATGCTGTCACATCTATCACAGGCAGTGGCGACATCGCTATTGCTACTAATAAGTTTACTTTGGATAGTGCTAATGGCAATGCAGTATTCGGGGGGAACATTACAGGTGGTGGCGACATCACCGCATCAAGTGGAACTGCATTCCAACTTGGGTCATCATCATCTGCCAAACTCGGTGTTGGTAGAGCAGCTGCCACGTATAATCTAGAGGTTGAAGGGGATATATACTCTACAGGTTCTACGATTATTGCAGGAAATGGATCCGTTGGTAAGTTCATCCTTCAAAAGGGTGCTGCTGCTATAGGCATACACTTTACTAACAATGTTGGAACCGATGAAGCTGTCATAGATGCTTCTGGTCGTTTCGGTATTGGTAAAACACCAGCTAAAAAGTTGGATGTTTCTGGTGATGCGGGTATTGATGGTGACATAACTATTGTTACAACCAATCCAACAAACAACACAGGTGGTAAAATATCTGCAAGAGAACTTGTTCTTACAGATCCTTCCACAGGTGCAACAACCACATTAAACGCGATAAGCGGAGGTGGTGGTCTCTCAAGAGGCAAGGTATTCTTCTTATCTAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0508b073973a88c2539318c855c3c0ed239d94ff915757bbfb8a89a1e77a0e3c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6048
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage M4-259 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank