Protein

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Genbank accession
QNI20709.1 [GenBank]
Protein name
tail collar domain protein
RBP type
TSP
Evidence RBPdetect
Probability 0,67
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MATLKQIQFKRSKVAGVNPTAAQLAEGELAINLKDRTLFTKDDLGNIISLGFAKGGDINGNVTQNGDYLQNGTYNLNGTQFVYAGKYIEFLPKTAGNGAWANQHQNKAPIFTDLSSTTSTSEYHPLIKQRYKDGTFSVGTLVSEGSFRVHYIDSTAPDNSKHWVFNRNGNFIVDSGSIEVRTGNISASGNINSANGIVSAPQVNTKTIVLDTKAFGQYDSQSLVQYVYPGTGEENGINYLRKVRAKSGGTIYHEIASAQTGKNDEISWWTGNTLTTKLMGLRNDGAMVLRRSLAIGTITTDENTNNYGSPTPMGERYIALGDAATGLKYIKQGVYDLVGNWNSVASITPDSFRSTRKALFGRSEDQGGTWTMPGTNAALLSVQTQADTNNAGDGQTHIGYNSGGKFSHYFRGTGQMNINTQQGMELNPGILKLVTGANNIQFYADGTISSIQPIKLDNEIFLTKSDNSAGLKFGAPSQVDGTRVIQWNGGTRAGQNKSYVTVKAWGNSFNASGDRTRETVFEVADGQGYYFYSQRVAPTGSETVGPVVTQFNGQVNARGSIITDGSLRVNGLSALSGQVTMDNGLVLSGGGSITGQVKIGNTVDAFRIYNAEYGAIFRRSEASLHIIPTLKDAGESGGISNLRPLSISLNNGMVQMRHSVTLGDDGAGGNMVTVDNDNKLVVITSHSRISPNYRMQLGQSAYIDAECTDTARPAGAGSFASQNNENVRAPFYMNIDRTDTSTYVPIVKQRYVQNNSCYSIGTLINGGNFRVHYHEGGDGVSTGAVIKDLGWEFNKNGDFYSPGKLGAGNVRIGTDGNITGGSGNFANLNTTINNLKTDIVSSYPIGAPIPWPTDTPPEGYAIMEGQTFDAELYPKLAAVYPSGSLPDMRGQTIKGKPSGRAVLSTEADGVKSHSHSASASSTDLGTKNTSSFDYGSKTTSSFDYGTKTSNTTGNHNHTVSGNTSSAGAHQHARSGPQIQAGIPNNIFYDGYNSVGANANAKFTGSVNGATAGSNIAKTSSDGAHTHSWSGTTSTTGNHAHTVGIGAHSHTVGIGAHSHTVAIGSHGHTITVNATGNTENTVKNVAFNYIVRLA
Physico‐chemical
properties
protein length:1093 AA
molecular weight: 115922,33260 Da
isoelectric point:8,32482
aromaticity:0,08143
hydropathy:-0,42434

Domains

Domains [InterPro]
DC_0538
STR
1–1091
DC_0538
IPR051934
Unmapped
735–1093
IPR051934
SSF88874
STR
834–965
SSF88874 SSF88874
IPR037053
ATT
841–894
IPR037053
IPR011083
ATT
846–893
IPR011083
QNI20709.1
1 1093
Architecture
STR
ATT
STR
STR 1-840 | ATT 841-894 | STR 895-1092 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QNI20709.1
1 1093
Domain Start End Length (AA) Confidence
N-terminal 1 779 779 0,0641
Central domain 780 978 200 0,1985
C-terminal 979 1093 114 0,9947
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-779
Central
780-978
C-terminal
979-1093

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage JN02
[NCBI] 		2759202 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QNI20709.1 [NCBI]
Genbank nucleotide accession
MT782071 [NCBI]
CDS location
range 156893 -> 160174
strand +
CDS
ATGGCTACATTAAAACAGATACAATTTAAAAGAAGCAAAGTGGCAGGAGTTAATCCTACTGCAGCACAATTAGCCGAAGGCGAATTAGCGATAAACTTAAAAGATCGAACTCTTTTTACTAAAGATGACCTCGGTAATATTATTAGCCTAGGCTTTGCTAAGGGCGGGGATATTAACGGTAATGTAACTCAAAATGGTGATTATTTACAAAACGGCACATATAATCTTAATGGAACCCAGTTTGTTTATGCAGGAAAGTATATTGAATTCTTGCCAAAAACTGCTGGAAATGGCGCTTGGGCTAACCAACATCAGAATAAAGCCCCTATCTTTACAGATTTGAGTTCAACTACTTCAACTTCTGAATACCACCCTTTGATTAAGCAACGTTATAAAGATGGTACTTTTTCAGTAGGTACATTAGTAAGCGAAGGCTCATTTAGAGTCCATTATATTGATTCTACAGCTCCAGACAATTCTAAACACTGGGTCTTTAACCGTAATGGTAATTTTATTGTAGATTCTGGTAGTATTGAGGTCCGCACAGGTAATATTTCTGCGTCCGGAAATATTAACTCCGCTAATGGTATAGTTTCTGCTCCACAAGTTAATACGAAAACCATTGTTTTGGACACAAAAGCATTCGGACAATATGATTCGCAATCATTAGTTCAATATGTTTATCCTGGAACAGGTGAAGAAAATGGTATAAACTATCTTCGTAAAGTTCGAGCTAAATCGGGCGGAACTATTTACCATGAAATCGCTTCAGCTCAAACTGGTAAGAATGATGAAATTTCTTGGTGGACCGGAAATACACTTACTACTAAATTAATGGGTCTTCGTAATGATGGCGCAATGGTATTACGTCGTTCACTTGCTATTGGCACAATTACCACTGATGAAAATACTAACAACTATGGCTCTCCTACTCCAATGGGAGAAAGATATATTGCTTTGGGCGATGCTGCAACTGGTTTAAAATATATTAAGCAAGGCGTTTATGATTTAGTAGGTAATTGGAATTCTGTTGCTTCTATTACTCCTGATAGTTTCCGTAGTACTCGTAAAGCATTATTTGGACGCTCAGAAGACCAAGGCGGAACCTGGACAATGCCTGGAACCAACGCCGCGCTTTTATCGGTTCAAACCCAGGCTGATACAAACAATGCAGGTGATGGTCAAACCCACATTGGATATAATTCTGGCGGTAAATTTTCTCATTATTTCCGTGGTACAGGTCAGATGAATATCAATACCCAACAAGGTATGGAACTTAACCCAGGTATTCTTAAACTGGTAACCGGCGCAAATAATATACAGTTTTATGCCGACGGAACTATTTCTTCCATTCAACCTATTAAATTAGATAACGAGATATTTTTAACTAAATCTGATAATAGTGCAGGTCTTAAATTCGGAGCCCCTAGCCAAGTTGATGGCACAAGGGTTATCCAGTGGAATGGCGGCACTCGCGCTGGTCAGAATAAGAGTTATGTAACTGTAAAGGCTTGGGGTAATTCATTTAACGCATCCGGCGATCGTACTCGTGAAACAGTTTTTGAAGTAGCTGACGGGCAGGGATATTATTTTTATTCTCAGCGCGTAGCTCCAACCGGTTCAGAAACTGTGGGACCTGTTGTAACCCAGTTCAATGGACAAGTTAATGCTAGAGGGAGCATTATCACCGATGGAAGTCTTAGAGTTAATGGATTAAGTGCATTATCCGGACAAGTTACTATGGATAACGGGCTTGTTTTATCCGGTGGTGGTTCTATTACCGGCCAAGTTAAAATCGGTAATACCGTAGATGCTTTCCGTATTTACAATGCTGAATATGGAGCTATTTTCCGTCGTTCTGAAGCGTCTTTGCATATTATACCTACACTTAAAGATGCAGGTGAAAGTGGTGGAATAAGTAATCTCCGTCCACTAAGTATTAGTCTTAATAATGGTATGGTTCAAATGCGCCATTCTGTTACGTTAGGTGATGATGGTGCTGGCGGTAATATGGTGACCGTTGATAATGATAATAAACTTGTTGTTATAACTAGCCATAGTCGCATTTCTCCTAATTACCGTATGCAGTTAGGTCAGTCGGCATACATTGATGCAGAATGTACTGATACTGCACGACCTGCTGGAGCCGGTTCTTTTGCTTCACAAAATAATGAAAACGTTCGTGCTCCGTTCTATATGAATATTGATAGAACAGATACAAGCACTTATGTTCCTATTGTGAAACAAAGATACGTTCAAAATAATAGTTGCTATTCTATTGGTACTTTAATTAATGGTGGTAACTTTAGAGTTCATTATCACGAAGGTGGTGACGGCGTTTCTACTGGTGCTGTTATAAAGGATCTTGGATGGGAATTTAATAAAAACGGTGATTTTTATTCTCCTGGTAAATTAGGCGCTGGTAATGTTCGTATTGGTACTGATGGTAATATCACTGGCGGTTCTGGTAATTTTGCTAACTTGAATACCACAATAAATAACCTTAAGACGGATATTGTCTCAAGTTATCCAATTGGTGCTCCGATTCCTTGGCCTACTGATACACCTCCTGAAGGTTACGCCATAATGGAAGGTCAAACATTTGATGCTGAGTTGTATCCTAAGTTAGCTGCTGTGTATCCTTCCGGCTCTCTGCCTGATATGCGTGGTCAAACTATCAAGGGTAAACCATCTGGGCGTGCTGTATTAAGTACAGAAGCAGACGGTGTTAAGTCACATAGCCATAGTGCAAGTGCATCAAGCACAGATTTGGGTACTAAAAATACGTCAAGTTTTGATTATGGTAGCAAAACGACTTCAAGCTTTGATTATGGTACTAAGACCAGTAATACCACTGGCAACCATAACCATACAGTAAGTGGTAATACTAGTTCCGCTGGTGCTCACCAACACGCGCGTTCAGGCCCTCAGATACAAGCCGGCATACCCAATAACATATTCTATGACGGATATAATAGTGTAGGTGCAAACGCCAACGCTAAATTCACTGGATCCGTGAATGGTGCTACTGCAGGGTCGAATATAGCCAAAACTTCTTCAGATGGTGCTCATACTCATAGTTGGTCAGGTACTACAAGTACCACAGGTAACCATGCTCATACGGTAGGTATTGGTGCTCATTCTCATACTGTGGGTATTGGTGCTCATTCTCATACTGTTGCAATTGGTTCCCATGGACATACAATAACTGTAAATGCCACAGGAAATACAGAAAACACTGTTAAAAACGTTGCTTTTAACTATATCGTTCGTTTAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
84f42cee2fa0028b0b09c3db9f8f872382552f86c8cc47ddeffcc7f9761726ac
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2908
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Investigating the biocontrol potential of a phage cocktail against E. coli in different food Li,Y., Wu,G., Zhong,C., Shu,M., Chen,H., Bi,Y. and Yang,H. 2023-02 — GenBank