Protein

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Genbank accession
XYL02702.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MANVIKTVVTYNLDGSRDFAVPFEYLARKFVKVTLIGQDRRELDITTDFRFSTKTTITTTRTWGAADGYSLIEIRRFTSVSDRLVDFQDGSILRANDLNLAQIQAIHIAEEARDLTADTIAVDNDGNLDARGRRLVNLIDGVDPQDAVTVKQLRETNGSAADVLNILSGTAGFNRVYGFQTIRMDTAQAKITTVFKEGQRVYLTDRGLFFKFTSGRYVVGNAPEALLSAEDELHIFVDSGGMLEFDDYESLSFLEAKNYHNYLADFRTNTPIIMGAYGDSITFGLQADGSQAPNNYPKTAASVISQRTRTPFTAINRGIPSDRALTNYLRYPQGIAGTRLSTIMLGVNDVQFATGNGADWNAIKSNLYSVENFHVVMRKFVAREILRGNAVVLLGMTQYVSLNLGELGGFSTPYLAQCYEAAIRSIAKEFNVMYVNTRKDIIGNYGISESCYDGLHPKDSFQKIIGVRLAAMLLHVDYKNPLEVGAGSIASANILKSPIVSNRTLVVSDKAGFSSPLGGAENNPAATGVKIPEGETGGSVTVSFYLKDDSAVIFPTINGDTDYSFDMFLNEGDKQPDFDYDGDLLLKDRQYHISAKSIAGSAPKHRLTENYSQIYGGCYFHVTSRGWHILTFNAGPNAGNVSYEGLVVTSWESVRSNDVYLGVNGLATKDASGITVEKNILVCHKVQDGQYNVTTANLNPTTYMVDVETPQDDRLLLSQVLYKTQSGFQVRFYDKDNLLSEPAEFTIKIIGGR
Physico‐chemical
properties
protein length:753 AA
molecular weight: 82883,17350 Da
isoelectric point:5,41104
aromaticity:0,09827
hydropathy:-0,19363

Domains

Domains [InterPro]
IPR005604
ATT
1–130
IPR005604 IPR036514
DC_1510
STR
1–412
DC_1510 DC_0735
SSF52266
STR
276–473
SSF52266
cd00229
ENZ
276–471
cd00229
IPR013830
ENZ
276–460
IPR013830
XYL02702.1
1 753
Architecture
ATT
STR
RBD
ATT 1-130 | STR 131-475 | RBD 476-727 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYL02702.1
1 753
Domain Start End Length (AA) Confidence
N-terminal 1 253 253 0,9965
Central domain 254 452 200 0,5376
C-terminal 453 753 300 0,4651
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-253
Central
254-452
C-terminal
453-753

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage Pcc_P10
[NCBI] 		3446690 No lineage information
Host Pectobacterium carotovorum subsp. carotovorum
[NCBI] 		555 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Pectobacterium

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYL02702.1 [NCBI]
Genbank nucleotide accession
PV827587.1 [NCBI]
CDS location
range 33817 -> 36078
strand +
CDS
ATGGCTAACGTAATTAAAACAGTCGTGACTTACAATCTGGATGGCTCAAGAGACTTTGCGGTGCCGTTTGAGTACCTCGCAAGGAAATTCGTCAAGGTGACGCTTATTGGTCAAGACCGCCGTGAGTTGGACATTACGACCGACTTTCGGTTCTCCACAAAGACCACCATTACGACCACTCGTACGTGGGGAGCTGCTGACGGTTATTCACTGATTGAGATTCGACGCTTCACATCCGTAAGTGACCGATTGGTGGACTTTCAGGACGGCTCAATCCTGCGGGCTAATGACCTTAACTTGGCGCAGATTCAGGCTATTCATATTGCCGAAGAAGCTCGTGACTTAACGGCTGACACTATCGCAGTGGATAATGATGGTAATCTTGATGCTCGTGGTCGCCGTCTGGTTAATCTTATTGATGGTGTTGACCCTCAGGACGCCGTTACGGTAAAACAGTTGCGCGAAACCAATGGTTCTGCTGCTGACGTTCTGAATATCTTATCGGGAACCGCTGGGTTCAACCGTGTGTATGGCTTCCAGACAATCCGTATGGACACCGCACAGGCTAAGATTACCACAGTCTTCAAGGAAGGACAGCGTGTCTACCTGACTGACCGTGGTCTGTTCTTTAAGTTTACCTCTGGGCGATATGTTGTAGGTAATGCGCCGGAAGCATTACTGAGTGCTGAGGATGAGCTTCATATCTTTGTGGACTCAGGCGGTATGCTGGAGTTTGATGATTATGAGTCTCTTAGTTTCCTTGAAGCAAAGAACTATCATAACTATCTGGCAGATTTCAGAACCAATACGCCAATCATTATGGGTGCATATGGTGATAGTATTACGTTTGGCCTTCAGGCTGACGGTAGCCAAGCCCCAAACAACTACCCTAAGACGGCGGCTTCTGTAATCTCACAGCGAACCCGTACACCATTTACTGCGATTAACCGTGGAATTCCTTCAGACCGTGCGTTGACCAACTACCTCCGGTATCCTCAAGGCATCGCTGGGACGCGCCTATCGACCATCATGCTAGGCGTCAATGACGTTCAGTTTGCGACTGGCAATGGTGCTGATTGGAATGCCATTAAGAGCAACCTTTACTCCGTTGAGAACTTCCATGTAGTCATGCGTAAGTTTGTGGCTCGTGAGATTCTCCGTGGTAACGCTGTGGTTCTCTTGGGGATGACACAGTACGTCTCACTGAATCTAGGTGAGCTGGGTGGTTTCTCTACTCCATATCTGGCACAGTGCTACGAGGCCGCTATCCGGTCAATCGCTAAAGAGTTCAATGTGATGTACGTCAACACTCGTAAAGACATCATTGGGAACTACGGCATTTCTGAGAGCTGTTACGATGGGTTGCACCCTAAGGACTCCTTCCAGAAAATCATTGGTGTTCGTCTAGCGGCTATGTTGCTGCATGTAGACTATAAGAACCCACTTGAAGTTGGTGCTGGGAGTATCGCAAGCGCTAACATCCTGAAGAGTCCTATTGTGTCCAACCGTACCTTAGTGGTTAGCGATAAGGCTGGCTTCAGTTCACCTCTAGGTGGCGCTGAGAACAACCCAGCAGCGACTGGCGTCAAGATTCCTGAAGGGGAAACTGGTGGGTCTGTGACCGTTTCGTTTTATCTTAAGGATGACTCAGCGGTAATCTTCCCGACTATCAACGGTGACACGGATTATAGCTTCGATATGTTCCTTAATGAAGGTGATAAGCAGCCGGACTTTGACTACGATGGTGACCTGCTTCTGAAAGACCGTCAGTACCACATTAGCGCTAAGTCCATCGCAGGGAGTGCCCCTAAGCACAGGCTCACTGAGAACTACTCTCAGATTTACGGTGGGTGTTACTTCCACGTTACCTCTCGTGGTTGGCACATCCTGACGTTCAACGCTGGCCCGAACGCTGGGAACGTATCCTATGAGGGTCTCGTTGTGACCTCTTGGGAGTCTGTACGAAGCAACGACGTATACCTTGGAGTTAACGGTCTGGCAACTAAAGACGCTTCAGGTATCACCGTAGAGAAGAACATCTTGGTTTGCCATAAGGTGCAGGATGGGCAGTACAACGTTACGACTGCGAACCTCAACCCTACGACCTATATGGTCGACGTTGAGACCCCTCAGGATGACCGTCTGCTACTGTCGCAGGTTCTCTATAAGACCCAGAGTGGATTCCAAGTGCGCTTCTACGATAAGGATAACCTCCTGTCAGAGCCTGCTGAGTTCACCATTAAGATTATCGGAGGTAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f4f82b98da72608be29bb8bbdcbf805e18f074e71e0d5baec6b5eb7fcb8f4d27
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8689
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50