Protein

View in Explore

Genbank accession

USW07479.1 [GenBank]

Protein name

tail fiber

RBP type

Evidence GenBank

Probability 1,00

TSP

Evidence DepoScope

Probability 0,99

TSP

Evidence RBPdetect

Probability 0,83

Evidence RBPdetect2

Probability 0,93

Protein sequence

MATLKQIQFKRSKTAGARPAASVLAEGELAINLKDRTLFTKNDAGQIIDLGFAKGGQVDGDVTINGKLTLNGAYVQTLGGINTTGGINAGASIGATTYYALGGSFYARAPDAETNAHVWFENTGGGERGVIWAIPNTSDLGQVKIRAKTTGGVFAGEYSFRSDGRFDVPVAVKIGGAAMLTKDGNITSGSLFGGNLNNYLTSIKNDIVAGDNKKVSKTGDTMSGNLTINANLKVENSNGTFVDLGSENSSNYSRLTLARKVGDGAGVAMLKVTPEGNVQFGYQPTVATPSPTKYILVKSSGLEVEGDLVFKQTYRGVEEAFDITDQTIDLNSLIIRGSDLGTRKLYKCRSSGGGNNISNKPTSDGNFTLEVLSLRKVSDTDWSCKQTFTTKNNGVVGVYVRYGQGGSWSAWQEVVSGVQPIKLGGTGATSVAAARNNLGVGEGQTVTFGNLVTTDLTVSGNARLVGRLNFGSNSQSAGVLRANEGGAVVLSSASGANIHIRADGDTSTGETRFEPNGNVVVDGAITASKSITVNTASDAIIINAPTQESSNFIQGRKAGVNKWYVGIGDGGNVVRLYNQVYSHGISLSSDTVGITKPLKVGNAQLGTDGNITGGTGNFANLNTTLDRKVNVGTWSGSNVAAGWYKFATVTMPQSVATAQFKITGGNGYTVNSSEQATITEIVLRTGNNNPKGINATLWARTGNGFTNIATVNTSGDDYDIYLYVGTYADKLIVEYDCTANTRYISVVGLNGVNQTPVAELPAGHLRGQVYMMYSDAQIPYPVGAPIPWPSDSVPDGFALMEGQTFDTSAYPKLAIAYPTGTIPDMRGQTIKGKPSGRAVLSAEADGVKAHSHSASASSTDLGTKTTSSFDYGTKTSNSTGAHTHAVSGSTNYTGAHQHSVGGRYGGDSIGGRLRVQAEGTNQISSVAGDHSHTLSGTAASAGDHAHSVGIGAHTHTVAIGSHGHTITVNSTGNTENTVKNIAFNYIVRLA

Physico‐chemical properties

protein length:	990 AA
molecular weight:	102964,89260 Da
isoelectric point:	8,49502
aromaticity:	0,07071
hydropathy:	-0,23758

Domains

Domains [InterPro]

DC_0468
STR
1–518

DC_0468 G3DSA:6.20.80.10 IPR051934

cd19958
STR
327–414

cd19958 IPR048388 DC_0310

DC_0387
STR
588–787

DC_0387 SSF88874

SSF88874
STR
775–901

SSF88874

IPR037053
ATT
779–831

IPR037053

IPR011083
ATT
783–830

IPR011083

USW07479.1

1 990

Architecture

STR

ATT

STR

ATT

STR

STR 1-518 | ATT 538-613 | STR 614-778 | ATT 779-831 | STR 832-990

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0468	STR	DC_0468	1	518	Novel HMM	DC_0468	Central	Low	Positional only	72 proteins / 72 hits
cd19958	STR	DC_0464	327	414	InterPro cluster	cd19958	Central	Low	Positional only	1183 proteins / 1674 hits
G3DSA:6.20.80.10	STR	G3DSA:6.20.80.10	538	596	Merged direct domain	G3DSA:6.20.80.10	Central	Low	Positional only	37 proteins / 37 hits
IPR048388	ATT	DC_0224	539	613	InterPro cluster	Tail fibre protein gp37, trimerization region	Central	Medium	Text match	404 proteins / 802 hits
DC_0387	STR	DC_0387	588	787	Novel HMM	DC_0387	Central	Low	Positional only	34 proteins / 34 hits
IPR051934	Unmapped	-	630	990	InterPro	Bacteriophage Tail Fiber Structural Protein	-	-	-	-
DC_0310	STR	DC_0310	738	990	Novel HMM	DC_0310	Central	Low	Positional only	71 proteins / 71 hits
SSF88874	STR	SSF88874	775	901	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR037053	ATT	IPR037053	779	831	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
IPR011083	ATT	DC_0235	783	830	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits
SSF88874	STR	SSF88874	903	989	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

USW07479.1

1 990

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	575	575	0,1692
Central domain	576	774	200	0,4927
C-terminal	775	990	215	0,9949

Note: Constraints were applied during segmentation.
Fixed 486 C-terminal predictions appearing before Central domain

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-575

Central
576-774

C-terminal
775-990

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Salmonella phage GRNsp7 [NCBI]	2959431	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	Salmonella enteritidis [NCBI]	149539	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Genbank protein accession

USW07479.1 [NCBI]

Genbank nucleotide accession

ON720975.1 [NCBI]

CDS location

range 128043 -> 131015
strand -

CDS

ATGGCTACTTTAAAACAGATACAATTTAAAAGAAGTAAAACCGCAGGTGCACGTCCTGCTGCTTCAGTATTAGCCGAAGGTGAATTGGCTATAAACTTAAAAGATAGAACACTTTTTACTAAAAATGATGCAGGTCAAATTATCGATCTTGGCTTCGCTAAAGGTGGGCAAGTCGATGGTGATGTGACTATCAACGGTAAATTAACATTAAATGGCGCGTATGTTCAGACGCTGGGTGGTATTAATACTACGGGTGGTATTAATGCTGGAGCCTCTATAGGTGCAACAACTTATTATGCTCTAGGTGGTTCTTTTTATGCTCGTGCTCCAGACGCAGAAACGAATGCCCATGTTTGGTTTGAAAATACCGGTGGTGGCGAACGTGGTGTGATTTGGGCTATTCCGAACACTTCAGACCTTGGCCAGGTCAAAATTCGGGCGAAAACCACTGGTGGTGTTTTCGCCGGCGAGTACAGTTTCCGCTCTGATGGCCGATTTGATGTTCCTGTAGCAGTTAAAATCGGCGGAGCAGCGATGCTAACCAAAGACGGCAACATTACATCAGGTTCATTGTTTGGTGGTAACCTTAACAACTATTTGACTTCTATTAAAAATGACATTGTTGCTGGTGATAATAAGAAAGTAAGTAAAACCGGTGACACTATGTCCGGTAACTTGACTATTAACGCTAACTTAAAAGTCGAAAACTCTAATGGAACGTTTGTTGATTTAGGTTCAGAGAACTCTAGTAACTATAGCAGATTAACTCTTGCTCGTAAAGTTGGAGATGGCGCTGGTGTAGCAATGCTTAAAGTTACTCCTGAAGGAAACGTGCAATTTGGTTATCAACCTACAGTTGCTACTCCATCTCCTACCAAGTATATTCTAGTTAAATCTAGCGGTCTTGAAGTAGAAGGGGATTTAGTTTTTAAGCAAACTTATCGTGGTGTTGAAGAAGCATTTGATATTACTGATCAGACTATTGACCTTAATAGCCTTATTATTAGAGGATCAGATTTAGGTACTCGTAAGCTGTATAAATGCAGATCATCTGGCGGCGGAAATAATATATCGAACAAACCTACATCTGATGGCAACTTTACTCTTGAAGTTCTGTCTTTACGCAAGGTTTCTGATACCGATTGGTCATGTAAGCAGACCTTTACTACAAAGAACAATGGTGTTGTAGGCGTATATGTTCGCTACGGGCAAGGCGGCTCATGGTCTGCATGGCAAGAAGTTGTATCTGGTGTTCAGCCAATTAAATTAGGTGGTACTGGAGCAACTTCTGTAGCTGCTGCCCGTAATAACCTTGGCGTTGGTGAAGGTCAAACTGTAACATTCGGTAATTTAGTTACCACCGATTTAACCGTAAGTGGAAATGCTAGATTAGTCGGAAGACTGAACTTTGGTTCTAATTCTCAGTCGGCTGGTGTATTACGCGCCAACGAAGGTGGGGCTGTTGTTTTAAGTTCTGCAAGTGGTGCAAACATCCACATCAGAGCGGACGGCGATACTTCTACCGGTGAAACTCGCTTTGAGCCAAATGGCAACGTTGTAGTTGATGGTGCTATTACAGCATCTAAGAGTATTACAGTTAATACTGCCTCTGATGCTATTATTATTAACGCTCCAACACAAGAGTCTTCTAACTTCATCCAAGGACGTAAAGCCGGTGTCAACAAATGGTATGTTGGCATTGGCGACGGCGGTAATGTGGTACGTCTATATAACCAAGTATATTCTCACGGTATTTCATTAAGCTCTGATACTGTCGGTATTACTAAGCCTCTTAAAGTTGGAAATGCCCAACTAGGAACTGACGGTAATATAACCGGCGGCACTGGTAATTTTGCTAACTTGAACACTACTTTAGACCGCAAAGTTAATGTCGGAACTTGGTCGGGCAGTAACGTCGCAGCGGGTTGGTATAAATTTGCTACTGTAACTATGCCTCAAAGTGTGGCTACTGCCCAATTTAAAATTACTGGCGGCAACGGATATACTGTCAATTCATCGGAACAAGCCACAATTACTGAAATAGTTCTTAGAACTGGTAATAACAACCCTAAGGGTATTAATGCCACCTTATGGGCGCGCACGGGTAATGGATTTACTAATATAGCAACAGTTAATACTTCTGGTGACGACTACGATATTTATCTATACGTTGGAACTTACGCGGACAAACTTATAGTCGAATATGATTGTACAGCAAACACCCGATATATTTCGGTAGTCGGTCTTAATGGTGTGAATCAAACCCCAGTAGCAGAATTACCCGCCGGTCATCTGCGTGGTCAAGTGTATATGATGTACTCCGATGCTCAGATACCTTATCCGGTCGGTGCTCCTATTCCGTGGCCAAGTGATTCAGTTCCTGATGGATTTGCTTTGATGGAAGGTCAGACTTTTGATACTTCAGCTTATCCTAAGCTCGCTATAGCATATCCTACCGGTACTATTCCTGATATGCGAGGCCAAACTATTAAGGGTAAACCAAGTGGTCGTGCTGTTTTGAGCGCTGAGGCAGATGGTGTTAAGGCTCATAGCCATAGTGCATCGGCTTCAAGTACTGACTTAGGTACTAAAACCACATCAAGCTTTGACTATGGTACGAAGACATCTAACAGCACTGGTGCTCATACCCACGCAGTGAGTGGCTCTACTAACTACACTGGTGCTCACCAGCATAGTGTAGGTGGTCGTTATGGTGGTGACTCTATCGGTGGTAGACTGCGTGTTCAGGCAGAAGGGACAAACCAGATTTCAAGTGTTGCTGGTGACCACTCCCACACACTATCAGGTACTGCTGCATCTGCTGGTGACCATGCCCACTCTGTAGGTATAGGTGCTCATACCCACACGGTAGCAATTGGATCACATGGTCATACTATCACTGTAAATAGTACAGGTAATACAGAAAACACGGTTAAAAACATTGCTTTTAACTATATTGTTCGCTTAGCATAA

Genome Context

Tertiary structure

PDB ID

ecdff8547e0632fa7eb3b4288eef9ccb4f46f65d78ad5f9584603ec528d2ffae

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,5948

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Three novel Salmonella bacteriophage and their application in different food matrices	Li,Y., Lv,P., Shi,D., Zhao,H., Yuan,X., Jin,X. and Wang,X.	2018-09	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature