Protein

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Genbank accession
WZL14751.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MPQGAILTNIGLSKISSATPLEQLNVVQLAVGDGAGGYPALTPDMTGLVNEVWRGTASNPIRDPNNANVLIFEAAIPASAGPFTIREQAIFDDAGDMIAIGQTSVVEKPDPNESVGVVATMRLHIALSNAEQVDLFYTDTTAAHHNSLTNRDEADSHPASAVTGVSEMRNGIIRGNVFPHEPEKTVKNGDYVPERTTHLNVLIGGEAAIVAMSPISVGAVSSLTDFSATIGGTLVTFTKTNTSNYLTLNDALTSPYITLNSQIEVKERVNGSGGDGIKFDVVLTASVTPNGFDIIQSVSEPSLSLKMRNESRRFSSFGVVKESSNLSTFCRDVALNKYDANYLDHGTYNYSGNLFLADGQMLSGKGSGNTISSNKGTRLKPTDSDAKIRLFPHAKLSDVFIDGEYSESNKAVDGIYIKPHDSGDTDYVPGDPTTLSCIWPKVSNVNIQKFFNNISIEGESFNLWFEHLVSVAGRFKQVGGGESTLTACNLSDTTGQEIVFNDGGKISVHGGAIQNTNGGYPCIINKGKMLLQGVYMENARAGANNNGYLIDNYGTLTLVQPKSMAIADKAVRGRYGSKTYLRDVEFTGNNANTNEVFNGRGDNNNEGGGYLYFENLTLRSCLTTSINYIEHAIGGYSDKGYSIECGNEKTLYLNEGANLTDLTSSGGTLTANNTAEYLTNGESLRFVAASSAPSVTLTKTLRGLSGHLVMVRWAVLAKPSASDNTRFLANIGGDVTCAYVNVEFDADSANGNTDKWYYITTSAVLDPQLNEHVITCNLFTSLGASGSSNGTSHIDRIELVDCGLVHKP
Physico‐chemical
properties
protein length:808 AA
molecular weight: 86300,03380 Da
isoelectric point:5,06307
aromaticity:0,07550
hydropathy:-0,22092

Domains

Domains [InterPro]
IPR022225
ATT
5–135
IPR022225
IPR051934
Unmapped
5–144
IPR051934
DC_0194
STR
14–808
DC_0194
WZL14751.1
1 808
Architecture
ATT
STR
ATT 5-135 | STR 136-808
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WZL14751.1
1 808
Domain Start End Length (AA) Confidence
N-terminal 1 326 326 0,9446
Central domain 327 639 314 0,9699
C-terminal 640 808 168 0,9856
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-326
Central
327-639
C-terminal
640-808

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VpaM_XM1
[NCBI] 		3137906 No lineage information
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WZL14751.1 [NCBI]
Genbank nucleotide accession
PP580404.1 [NCBI]
CDS location
range 21898 -> 24324
strand +
CDS
ATGCCACAAGGTGCAATTTTAACAAACATTGGACTTTCAAAAATTTCAAGCGCAACGCCGCTAGAGCAGCTGAATGTTGTCCAGCTTGCTGTCGGTGATGGCGCTGGCGGTTATCCTGCTTTAACGCCGGATATGACCGGGTTGGTTAACGAGGTTTGGCGCGGAACCGCATCAAACCCAATCCGCGACCCGAACAATGCAAATGTATTGATTTTCGAAGCAGCGATTCCGGCCAGCGCAGGGCCATTTACAATCCGAGAACAGGCAATCTTTGATGACGCTGGCGACATGATAGCTATTGGTCAAACTTCCGTTGTTGAAAAGCCAGATCCAAATGAATCGGTTGGTGTAGTGGCCACAATGAGACTGCATATTGCTCTATCCAATGCAGAGCAGGTAGATCTTTTTTATACGGATACTACTGCAGCTCACCACAACTCATTAACTAACCGCGATGAGGCAGACTCGCATCCTGCTAGCGCAGTTACTGGTGTTAGTGAAATGCGTAATGGAATCATTCGTGGTAATGTTTTTCCACATGAGCCAGAGAAAACAGTTAAAAACGGCGACTATGTTCCAGAGAGAACCACACACCTTAACGTTTTGATTGGCGGCGAGGCTGCTATTGTTGCTATGTCTCCGATATCCGTAGGTGCTGTAAGTTCTTTGACGGATTTTAGTGCGACAATAGGTGGAACGCTCGTTACTTTCACAAAGACAAATACATCTAATTATTTAACTTTAAATGACGCATTAACAAGTCCATACATCACACTAAACTCACAGATAGAGGTAAAAGAGCGAGTTAACGGTAGCGGTGGGGATGGAATAAAGTTTGATGTAGTTCTCACCGCATCTGTAACGCCAAACGGATTTGACATTATCCAGAGTGTAAGCGAGCCCTCGTTGTCATTAAAAATGAGAAACGAATCAAGAAGATTTTCTTCTTTCGGTGTCGTAAAGGAGTCGTCAAACCTAAGCACTTTCTGTCGAGATGTTGCACTTAATAAGTACGATGCTAATTATCTAGATCATGGAACGTACAATTACTCTGGAAATTTATTTCTTGCTGATGGTCAGATGCTTAGCGGGAAAGGCTCAGGAAACACTATCTCATCAAACAAAGGGACAAGGCTAAAACCAACTGATTCTGATGCAAAAATTCGATTATTCCCGCATGCGAAATTGAGTGACGTTTTTATAGACGGCGAGTACTCGGAATCTAACAAAGCAGTGGATGGCATATACATTAAACCTCACGACTCGGGTGACACTGATTATGTGCCGGGTGACCCGACCACGCTGTCCTGTATTTGGCCAAAGGTATCAAATGTAAACATCCAAAAATTTTTCAACAATATATCAATCGAAGGTGAATCATTTAACTTGTGGTTTGAGCATCTTGTTTCGGTGGCTGGAAGATTTAAGCAAGTGGGTGGTGGAGAGTCAACATTGACAGCGTGCAACCTTTCAGACACAACAGGTCAGGAAATTGTGTTTAATGATGGTGGGAAAATCTCAGTTCATGGTGGAGCAATTCAAAACACAAACGGTGGATACCCTTGCATTATAAATAAAGGTAAAATGCTTCTTCAGGGCGTTTACATGGAAAATGCAAGAGCTGGCGCAAATAATAATGGTTATCTGATTGATAATTACGGAACGTTAACCCTAGTTCAGCCTAAGTCAATGGCAATAGCTGATAAAGCGGTTCGTGGTAGATATGGCAGTAAAACCTATTTACGTGATGTGGAATTTACAGGAAATAATGCCAACACCAATGAAGTTTTCAATGGTCGTGGTGACAATAACAATGAAGGTGGTGGATACCTTTATTTTGAAAACTTAACCCTTAGAAGCTGTCTTACAACATCTATAAATTATATAGAACATGCTATAGGTGGTTATAGCGACAAAGGTTACTCTATTGAATGTGGTAATGAAAAAACATTGTATCTGAACGAAGGGGCGAATCTGACTGATTTAACATCTTCAGGTGGCACACTGACTGCAAACAATACAGCAGAGTATTTAACAAATGGTGAATCGCTTCGGTTTGTAGCAGCATCATCAGCACCAAGTGTCACACTCACAAAAACATTGCGTGGCTTATCGGGTCACTTAGTTATGGTCAGATGGGCTGTTCTGGCTAAACCTTCAGCATCTGATAACACCAGGTTCCTAGCAAACATCGGTGGCGATGTAACTTGCGCTTATGTTAACGTTGAGTTTGACGCTGATTCGGCTAATGGGAATACTGACAAATGGTATTACATAACAACAAGCGCAGTTCTTGATCCTCAACTAAATGAACATGTCATTACTTGCAATTTATTTACCTCACTTGGCGCGTCAGGTTCAAGTAATGGCACTAGCCATATCGACAGAATTGAGCTTGTTGATTGCGGTTTAGTTCATAAGCCATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
317332138e51f38b965df81530cbe7f2df0f4e0d40c4ccc750795d5af698b7a1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7505
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and Genomic Analyses of dsDNA Vibrio phage vB_VpaM_XM1, Representing a New Viral Family Wei,Z., Li,X., Ai,C. and Dang,H. 2024-09-21 — GenBank