Protein

View in Explore
Genbank accession
APD21368.1 [GenBank]
Protein name
tail collar domain-containing protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,73
Protein sequence
MPRDSNGNTNPLQGTIVQTGDTILPSQHNPALVDLYAMMTQSLSRDGQGGMRANLAMNGFQVTGLGNATQPGNAVPLSQFQSGTPVGAVIDYAGVNPPNTWQFCFGQAIEVSAYPDFVAACYVGNALNATAGFGYRTTSQTDPSNNRSTSGQFIVLPDLRGRVGAGKDDMGGSAANRVTTTGSGINGALIGSNGGEQNSTLTIYQIPNHDHGGSTGNGVGSYTILNVLKNLTGNLSLSRNGQVGFTNENIPFSTHNHPISPQGGGLPHNNMQPTVIINKIIKVSY
Physico‐chemical
properties
protein length:285 AA
molecular weight: 29651,51390 Da
isoelectric point:6,57027
aromaticity:0,06316
hydropathy:-0,30175

Domains

Domains [InterPro]
DC_0363
ATT
1–90
DC_0363
SSF88874
STR
81–283
SSF88874
IPR037053
ATT
83–164
IPR037053
APD21368.1
1 285
Architecture
ATT
STR
ATT 1-164 | STR 165-283 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Brucella phage Iz
[NCBI] 		1920338 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Brucella sp.
[NCBI] 		52132 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
APD21368.1 [NCBI]
Genbank nucleotide accession
KY056619 [NCBI]
CDS location
range 19807 -> 20664
strand +
CDS
ATGCCAAGAGACAGCAACGGCAACACCAATCCACTGCAAGGGACTATCGTTCAAACCGGCGATACTATTCTGCCATCTCAGCACAACCCAGCGTTAGTTGATCTTTATGCAATGATGACGCAAAGCCTTAGCCGGGATGGGCAAGGTGGTATGCGCGCTAATCTTGCAATGAATGGGTTTCAGGTTACGGGATTAGGCAACGCTACCCAGCCGGGAAATGCAGTTCCATTGTCTCAGTTTCAGTCTGGTACTCCTGTGGGCGCAGTCATTGATTATGCTGGCGTTAACCCGCCTAATACGTGGCAATTTTGCTTTGGGCAAGCGATCGAAGTTTCAGCATATCCCGATTTCGTAGCAGCTTGCTATGTTGGTAATGCACTCAATGCCACGGCAGGATTTGGATATCGAACCACTTCACAGACTGATCCATCTAATAATAGGTCCACGTCTGGACAGTTTATTGTTTTGCCTGATTTGAGGGGCAGGGTAGGTGCTGGTAAGGATGACATGGGGGGTAGCGCTGCAAACCGTGTTACTACCACTGGAAGTGGGATTAATGGGGCTTTGATAGGTTCTAATGGTGGTGAGCAAAATAGTACACTAACAATATATCAAATTCCCAATCATGACCACGGTGGCAGTACAGGAAATGGGGTTGGTAGCTATACAATACTAAATGTACTCAAGAACTTAACTGGTAATTTAAGTTTGAGTAGAAATGGTCAAGTAGGTTTTACAAATGAAAATATACCATTTTCAACTCATAATCATCCTATAAGCCCACAAGGTGGAGGCTTGCCTCATAACAACATGCAGCCTACCGTAATAATCAACAAAATTATCAAGGTGTCTTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3bef9e38bf023dcbfd296f11e73da83dbb43e127f8f822f0266f0500cf70b77e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7122
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genetic Diversity of Brucella Reference and Non-reference Phages and Its Impact on Brucella-Typing Hammerl,J.A., Gollner,C., Jackel,C., Scholz,H.C., Nockler,K., Reetz,J., Al Dahouk,S. and Hertwig,S. 2017 28360895 GenBank