Protein

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Genbank accession
YAA50947.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MIKKFLNRVIPGTPQQILTGESWDTARLRVDVGQTGFWEGREFRSRVKFDLAVGAQLVLKVVSPIDFILHSQSVVLDGGAVRYRSFSESQVENVTGFTDIYPFVVPNNRMQSTPAYTRQVEVYQNGTLNIIAGQEDYGNDDILVMSSGATAQRSTISGGVSSERGVAAGTYYLIFDGVATSSSGYMYVKFEERP
Physico‐chemical
properties
protein length:194 AA
molecular weight: 21411,81350 Da
isoelectric point:5,46515
aromaticity:0,10825
hydropathy:-0,15928

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YAA50947.1
1 194
Domain Start End Length (AA) Confidence
N-terminal 1 22 22 0,9756
Central domain 23 183 162 0,0018
C-terminal 184 194 10 0,9980
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-22
Central
23-183
C-terminal
184-194

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage Xw-2
[NCBI] 		3459119 Viruses > unclassified bacterial viruses >
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YAA50947.1 [NCBI]
Genbank nucleotide accession
PX096588 [NCBI]
CDS location
range 35547 -> 36131
strand +
CDS
ATGATTAAGAAGTTTTTAAACAGAGTCATACCAGGTACGCCTCAGCAAATATTAACGGGCGAGTCATGGGATACTGCAAGACTTAGGGTTGATGTTGGGCAGACAGGCTTTTGGGAAGGTAGAGAGTTTAGGTCTAGAGTTAAGTTTGACTTAGCTGTTGGTGCTCAACTTGTTCTAAAGGTTGTTTCACCAATAGATTTCATACTTCACTCTCAATCTGTCGTTCTTGATGGTGGCGCGGTTAGGTATCGATCATTTAGCGAGTCTCAAGTTGAGAACGTTACTGGATTTACTGATATTTATCCGTTTGTTGTTCCAAACAATAGAATGCAATCGACGCCAGCTTACACTAGACAGGTTGAAGTTTATCAAAATGGTACTCTTAATATAATCGCTGGCCAGGAAGATTATGGAAACGATGATATTCTTGTTATGTCGTCTGGAGCTACAGCTCAGCGCTCAACCATATCCGGCGGAGTTAGTAGTGAGAGAGGCGTTGCAGCTGGTACGTACTACTTAATATTTGATGGTGTAGCAACAAGTAGTAGCGGATATATGTACGTTAAGTTTGAAGAAAGACCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
445526fb1624a0b304dc016e01bd49eb97ed625d20c6ce70fa863ef8652ce673
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8413
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50