Protein

View in Explore
Genbank accession
YP_001039806.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,73
Protein sequence
MSDTIQVGAHTLHQGDLIPQALHNAPCVATMFDTDFSLYLPFSGIVSPVTDTETEWIGIVNSGATATNPKLTLSLKRGVKIGDVLQGKFVDFVVLERGDEWVFTTSQPDIVYGVCVSKLGSGGGGIQDAPDDGFPYVRDSKEWSRLQGLSMHFADFPAHDAPYDMDTGDVPPDGSVVGGSNQIGQLQSFVLPKDKAYFGQWFLFSAEFGPYDIDSHTGLYYIDADGKQAIAHAGSPLHLEQGTFVRAVYNNWWHVYAEGNTRMDKNQTYVVLKDSGASGNAIIDLSGVLTIKDSSTPGSIGAGPQYWVPALDCAVTVTPDTPLEIDTADGLMTFDTVITFTVYDNAQDKVGVEAFSLDLKTGQKPVMPAAQFSIKAGQILEAKQSDPAALGTVNFFDVFIGMYGAVAGLGTGTGPMGPQGPAGKDGAPGAKGDKGDAGTPGVKGDDGDQGVKGDKGDKGDTGETGPAGGDAAVTVIETVATQTLNPGFNIIKTGAKTGSGAMYMPLSFNPGKRYLVLNASAGEISIGTGMDVYDENGMKSAGYPILTNGMTCEFFMNDSGRAIWIMTPQILPAMTANYGNPPA
Physico‐chemical
properties
protein length:583 AA
molecular weight: 61264,90330 Da
isoelectric point:4,46103
aromaticity:0,09091
hydropathy:-0,14305

Domains

Domains [InterPro]
DC_0341
STR
42–577
DC_0341
PTHR24637
Unmapped
412–469
PTHR24637
IPR008160
STR
414–468
IPR008160
YP_001039806.1
1 583
Architecture
STR
STR 42-577 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Burkholderia phage BcepF1
[NCBI] 		2886897 Uroviricota > Caudoviricetes > Lindbergviridae > Bcepfunavirus bcepF1 >
Host Burkholderia ambifaria
[NCBI] 		152480 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_001039806.1 [NCBI]
Genbank nucleotide accession
NC_009015 [NCBI]
CDS location
range 65072 -> 66823
strand -
CDS
ATGTCCGATACGATTCAAGTAGGTGCTCATACACTGCATCAAGGCGATTTGATTCCTCAGGCGCTGCATAACGCGCCATGCGTCGCGACGATGTTCGATACCGACTTTTCGCTTTACTTGCCGTTCAGCGGGATCGTGAGTCCGGTCACAGACACGGAAACCGAGTGGATCGGGATTGTCAACTCTGGCGCGACGGCAACGAATCCGAAGTTGACACTTTCCCTAAAGCGCGGCGTTAAGATCGGCGACGTTCTTCAGGGAAAGTTCGTCGATTTCGTTGTTCTCGAAAGAGGCGACGAATGGGTGTTCACGACCTCTCAACCGGACATTGTGTATGGCGTGTGCGTGTCGAAATTGGGTTCTGGCGGCGGCGGCATTCAAGACGCGCCGGACGACGGATTTCCATACGTTCGCGACTCGAAGGAATGGTCGAGGTTGCAAGGGCTGTCGATGCACTTCGCAGACTTCCCGGCTCACGATGCGCCTTATGACATGGACACCGGGGATGTTCCGCCGGATGGTTCTGTCGTTGGCGGCTCGAATCAAATCGGACAGCTTCAGTCGTTCGTCCTTCCGAAAGACAAAGCATATTTCGGGCAATGGTTCTTGTTTTCTGCGGAGTTCGGTCCGTATGACATTGACAGCCACACGGGGCTTTACTATATCGACGCGGACGGTAAGCAGGCAATCGCGCATGCGGGTTCGCCTCTTCACCTCGAACAAGGAACGTTCGTTCGCGCCGTATATAACAACTGGTGGCACGTCTACGCGGAAGGTAACACCCGCATGGACAAGAACCAAACATACGTAGTACTGAAGGATTCTGGCGCGTCGGGAAACGCAATCATCGATCTGTCTGGAGTGCTGACGATCAAGGATTCGTCGACGCCGGGATCGATTGGTGCTGGTCCGCAATATTGGGTTCCGGCATTGGACTGCGCTGTTACGGTCACGCCCGACACGCCGCTCGAAATCGATACGGCCGATGGTCTGATGACGTTCGATACGGTCATCACTTTCACGGTTTACGACAACGCGCAAGACAAGGTTGGAGTCGAGGCGTTCAGTCTTGACCTGAAAACGGGACAAAAACCCGTCATGCCGGCCGCTCAGTTCTCGATCAAGGCCGGCCAGATTCTCGAAGCGAAGCAGTCGGACCCCGCCGCGCTCGGAACTGTCAATTTCTTCGACGTGTTTATCGGCATGTACGGTGCGGTGGCTGGGCTCGGAACCGGTACAGGCCCGATGGGTCCGCAAGGCCCGGCAGGGAAAGACGGCGCTCCGGGTGCAAAGGGCGACAAGGGAGACGCCGGAACCCCCGGCGTGAAGGGAGACGACGGCGATCAGGGCGTAAAAGGTGACAAGGGGGATAAGGGCGACACCGGCGAGACAGGGCCGGCGGGCGGTGATGCAGCGGTAACGGTGATTGAAACCGTCGCGACTCAAACCCTTAACCCCGGTTTTAACATAATCAAAACAGGAGCAAAAACGGGATCGGGGGCTATGTATATGCCTTTGAGTTTCAACCCCGGAAAGAGATATCTGGTGCTTAACGCAAGTGCCGGAGAAATCTCGATCGGTACAGGAATGGATGTCTATGACGAAAACGGGATGAAGTCGGCCGGATATCCGATCCTCACCAATGGAATGACGTGTGAATTCTTCATGAACGATTCGGGCCGCGCGATATGGATCATGACGCCTCAGATTCTCCCGGCGATGACGGCAAATTACGGGAACCCGCCGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f5496de76c6ea91c4fa35a804fde3dce07f1bc0dae91e9b3d5e7e0a5ae6f882d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6421
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic analysis of Burkholderia ambifaria phage BcepF1, a member of the Bcep781- like phage supergroup Summer,E.J., Robinson,S., Haines,C., Adams,B., Daggett,M., Landua,J., Swanson,S., Vorndam,W., Morrison,W., Nail,K., Gonzalez,C. and Young,R. 2004-05 — GenBank