Protein

View in Explore
Genbank accession
AGK86557.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
TSP
Evidence RBPdetect2
Probability 0,51
Protein sequence
MAFPINPDPGDTYTDEYGTVWVYAGPINGWYRQTVIPVNDTTYIGSDGAPGGIGNNTEVVFNDNGSLASDSGLTYNKTTDALSGGAFIPTGSTVPSNGVYRPSANNVAISTNGTGRLFIDASGRIGIGTATANSVLHIASSDDPAITIADTSVADTHEQTVLMNNGGNFNIRTHANDGTFKSIDYIINRGASGATSHVWRIENSEQMRLDSSGRLGLGTSAPLRSLHIAGVGDTGLMLQTTNAVDDKEIWEIQVAGDASNHANLIFRSRTNAGTGGAEALRITNDGKVGIGSTTVEAKCHIQDTSNTTVRIKNASTSSGSTARLDFATTTGSGTSARIEAVRSADQSVPLIFYSAPSNAVISGEGFRLDGDGRLLVGTSSARTIRQYEPNLQVVSDSASGSTIAAYRYHTSTVNANGPRLLLARSGANTLDNTIVADGNALGEIAFCGADGVDLDTPAASIKAEVDGTPGANDMPGRLVLSTTSDGASSPTERLRIDSQGRVGIGTASPSTPLEVESSEDILIRAESTDRFAHIDLVDNAATTRFTTDGATGTLRLRADIGDAATGSTIQFEIDGSEHARIDSSGRLLVGTSSSSGQGSTLQVIGDQPIQIHRGVDGTNACILNISKSRNTTYGSYTIVQNDDDIGAISFRADDGTNYATTAAQIVAAVDGTPGANDMPGRLVFSTTSDSASSPTERLRITSDAYVRLASGTGGIQFNGDTAAANALDDYEEGTFTPVIEGTTSAGTGTYTFAWGYYTKVGNVVNYYVNMYWTAHTGTGNMIITGLPYVAPNLSNRNYAASVIANNISTSSSTAMVKAYIKPNEDKITMLEEPIGGGIANLGIDSAGSLFMSGSYLAA
Physico‐chemical
properties
protein length:858 AA
molecular weight: 89094,57250 Da
isoelectric point:4,66571
aromaticity:0,06177
hydropathy:-0,21084

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGK86557.1
1 858
Domain Start End Length (AA) Confidence
N-terminal 1 482 482 0,1329
Central domain 483 684 203 0,0882
C-terminal 685 858 173 0,9884
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-482
Central
483-684
C-terminal
685-858

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-CBP3
[NCBI] 		756276 Uroviricota > Caudoviricetes > Autographivirales > Lirvirus SCBP3 >
Host Synechococcus sp. CB0101
[NCBI] 		232348 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGK86557.1 [NCBI]
Genbank nucleotide accession
KC310803.1 [NCBI]
CDS location
range 1 -> 45871
strand +
CDS
ATGGCATTTCCAATTAACCCCGACCCAGGGGACACTTATACAGATGAATACGGAACAGTATGGGTCTATGCTGGTCCTATCAATGGGTGGTACAGACAAACTGTTATTCCTGTTAATGATACTACCTACATTGGTAGTGATGGAGCGCCTGGTGGTATTGGTAATAACACTGAGGTTGTCTTCAATGATAATGGTTCACTAGCAAGCGATAGTGGACTTACATATAATAAAACAACAGATGCTTTGAGTGGTGGAGCATTTATACCGACTGGTAGTACAGTACCAAGTAATGGTGTCTATAGGCCGTCTGCAAACAACGTAGCCATCTCGACTAATGGCACTGGGCGGTTGTTTATTGATGCGAGTGGGAGGATTGGGATTGGCACGGCGACGGCAAATAGCGTTTTACATATTGCATCTTCCGATGATCCAGCAATTACGATTGCGGATACTTCTGTAGCGGATACACATGAGCAAACAGTGCTCATGAACAATGGCGGCAATTTTAATATCAGAACTCATGCGAATGACGGTACATTTAAGTCCATTGATTACATAATCAATCGAGGAGCCTCTGGTGCTACGTCTCATGTGTGGCGTATTGAGAATAGCGAACAGATGCGACTGGACTCCAGTGGCCGTCTAGGTCTGGGGACTAGTGCGCCTCTTCGTAGTCTTCACATTGCAGGAGTTGGCGACACTGGTTTAATGCTTCAAACGACTAATGCTGTTGACGATAAAGAAATCTGGGAAATCCAAGTTGCCGGAGATGCGAGCAATCATGCCAACCTTATTTTTCGTTCCCGCACGAATGCAGGTACAGGCGGTGCTGAAGCACTCCGTATCACAAACGATGGGAAAGTAGGGATTGGCTCTACGACGGTTGAGGCAAAGTGTCATATTCAAGATACGTCAAACACAACAGTGCGGATTAAAAATGCAAGCACTTCATCTGGCAGCACGGCTCGGTTAGATTTTGCTACAACGACTGGCAGTGGAACGTCTGCACGCATTGAAGCTGTCCGCAGTGCTGATCAAAGCGTTCCTTTAATCTTTTATTCGGCTCCGTCCAATGCTGTTATCTCTGGTGAAGGATTCCGACTGGATGGAGATGGACGCCTCTTAGTTGGCACGTCTTCTGCGCGTACTATTCGTCAATACGAGCCAAATCTTCAGGTTGTTAGCGATAGCGCTTCCGGGTCAACTATTGCAGCATATAGATATCATACTTCAACCGTTAACGCCAATGGTCCACGCTTGCTGCTTGCTCGCTCTGGTGCCAACACATTAGATAACACTATTGTTGCAGATGGCAATGCACTGGGCGAAATTGCTTTTTGTGGCGCTGATGGTGTTGATCTAGATACTCCAGCCGCTTCGATCAAGGCTGAAGTAGACGGCACCCCCGGTGCTAACGATATGCCTGGGCGTCTCGTACTATCGACAACCTCAGACGGCGCCTCATCGCCCACCGAACGACTGCGTATTGACTCACAGGGTCGGGTGGGTATAGGTACGGCGAGTCCTAGCACACCTTTGGAAGTTGAGTCTTCTGAAGATATTTTGATAAGGGCGGAAAGCACGGATCGATTTGCCCATATTGATTTAGTTGATAACGCTGCAACTACACGTTTTACGACAGACGGTGCCACTGGTACATTGAGGCTTCGAGCTGACATCGGCGATGCCGCTACTGGTTCAACCATTCAATTTGAAATTGATGGCTCTGAGCACGCCCGAATCGACAGCTCCGGCAGGTTGTTAGTTGGCACGTCTAGTAGCTCTGGGCAAGGCAGTACTTTACAGGTAATAGGTGACCAACCCATTCAGATCCACAGGGGAGTGGATGGTACTAATGCGTGCATTCTGAACATTTCTAAATCTAGGAATACAACTTATGGGTCTTATACCATCGTTCAAAACGATGATGATATTGGGGCGATTTCGTTTAGAGCGGATGATGGCACAAATTACGCAACTACCGCCGCCCAGATCGTAGCAGCAGTAGACGGGACACCCGGCGCTAATGATATGCCGGGCAGGTTAGTGTTCTCCACTACGAGCGACTCTGCAAGTTCGCCAACTGAACGCCTGCGTATTACCTCCGACGCTTACGTCCGTCTTGCCTCTGGCACTGGTGGCATCCAGTTCAACGGTGACACCGCAGCGGCGAATGCGCTGGATGATTATGAGGAGGGGACGTTTACTCCAGTAATTGAAGGAACCACCAGTGCCGGGACAGGGACGTATACCTTTGCTTGGGGGTACTACACTAAAGTAGGTAACGTTGTTAATTATTATGTGAATATGTACTGGACCGCGCACACAGGCACGGGAAATATGATCATAACGGGCTTGCCTTACGTGGCTCCCAACCTTTCTAATAGGAATTATGCTGCTTCCGTAATAGCAAACAACATAAGTACATCTAGCAGCACTGCGATGGTCAAGGCTTACATTAAGCCAAACGAAGATAAAATTACCATGCTTGAAGAACCTATTGGCGGCGGCATTGCTAATCTCGGTATCGATTCCGCCGGGTCTCTATTTATGTCTGGATCTTATTTAGCCGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6bf53c787661af9f3dbc9aa33021024bba2a56d79aee1f9f96943777452e0f10
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7545
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50