Protein

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Genbank accession
BAV81237.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MKVLNGGGGGGEITVNDHTGEAISTGVATLEWQTLDKLGFTAVVDATDPSKVIIGEAPEFLDAVVWSSAQTTDVRVSVSDIAEADKFETQGWENTTVKGAISDYVYRTTVGRGFGPESSLVVKTYYDGDLVDDETFTASANGTTTQGNVSVQVSDYGPDGDGSVFKGKFTVVIDADGLIGSSDSGPTRVEIEFTEQKWAGRESINQNVFRDKNPATPRIDGDKLIDEPTDAADMVLKYISGIGYFTLSSPFDISVADIMDHNEDTSKPKDSLEFDSGAFGISDYASSPWTAATKWGNVSNLDTAQNLTYDERKEIDITNFRHVGDAKLGITVSDSWNDATEVFSNTLRVCIDTVSNPSTDLIEYFDEENKRLQGDYTTAWDSTRYCADGEAIFFGGKCYHGADLPRILENVEGTIGTGGSLSSTLPDREVNGNPRQNPNYAVHVKPAVHFREFITPDAASYAVFTMNITTNGDLQAQLDSGDLKIYIWKLDCIDITTPNIILPNAYNTANPTDSLANSIWAHEAYDFANFDDGATPNAAGSGCRANLTGNLLEVTTGGFSLLGGVLVRFEQAPGVVIEEVSVDFI
Physico‐chemical
properties
protein length:585 AA
molecular weight: 63041,39490 Da
isoelectric point:4,23635
aromaticity:0,09231
hydropathy:-0,29060

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VCPH
[NCBI] 		1674945 No lineage information
Host Vibrio harveyi
[NCBI] 		669 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BAV81237.1 [NCBI]
Genbank nucleotide accession
AP014889.1 [NCBI]
CDS location
range 43437 -> 45194
strand -
CDS
ATGAAAGTATTAAATGGTGGTGGTGGCGGTGGTGAGATTACCGTTAACGACCACACTGGAGAGGCTATCTCCACAGGTGTAGCAACACTAGAATGGCAAACATTAGATAAGCTTGGCTTCACCGCCGTAGTAGATGCGACAGATCCTTCCAAGGTAATTATCGGGGAAGCTCCTGAGTTCCTAGATGCGGTCGTGTGGTCGAGTGCACAAACAACAGATGTTAGGGTATCAGTATCTGACATTGCCGAAGCAGATAAGTTCGAAACACAGGGTTGGGAGAACACAACAGTTAAAGGTGCTATCTCAGACTATGTTTATAGAACAACTGTAGGACGTGGTTTCGGTCCGGAATCTTCTCTAGTAGTTAAGACTTACTACGACGGTGATCTGGTAGACGATGAAACCTTCACAGCCTCAGCTAACGGTACTACAACACAAGGTAACGTAAGCGTACAGGTTTCTGACTACGGTCCAGATGGTGACGGTAGCGTATTCAAAGGTAAGTTCACTGTAGTTATTGATGCTGACGGACTTATCGGGTCATCTGACTCCGGACCCACGCGTGTAGAGATCGAGTTCACTGAACAAAAGTGGGCGGGGCGCGAGAGTATTAACCAAAATGTATTTCGCGATAAAAACCCTGCGACGCCTCGAATCGACGGAGATAAGCTAATCGACGAACCTACAGATGCAGCAGATATGGTTCTTAAGTATATCAGCGGTATCGGTTACTTCACTCTTTCTAGCCCGTTCGATATTTCCGTTGCCGATATTATGGATCACAACGAAGATACGTCAAAACCTAAAGATTCCCTTGAGTTCGACTCGGGAGCATTCGGTATTAGCGACTACGCATCTTCGCCGTGGACAGCTGCTACAAAATGGGGCAACGTAAGCAATCTAGATACAGCCCAGAATCTGACGTACGACGAACGTAAAGAGATTGATATTACCAACTTCCGACATGTTGGTGATGCTAAGTTAGGTATTACGGTAAGTGATAGTTGGAACGACGCGACTGAGGTGTTCTCTAACACTCTTCGAGTTTGTATCGACACAGTTAGCAATCCTAGTACAGACCTTATTGAATACTTCGACGAAGAGAATAAGCGACTACAAGGTGACTACACAACAGCATGGGATAGTACTCGTTACTGTGCCGATGGTGAGGCAATATTCTTTGGTGGTAAGTGTTACCATGGAGCTGATCTACCACGCATCCTAGAGAACGTGGAAGGAACAATCGGAACAGGTGGATCTCTATCCTCAACCCTACCAGACAGAGAAGTTAACGGAAACCCTAGACAAAACCCAAATTACGCAGTACACGTTAAACCAGCGGTACACTTCAGGGAGTTCATCACACCGGACGCTGCATCTTATGCAGTATTCACTATGAACATCACTACTAACGGAGACTTACAGGCTCAGTTAGACTCAGGCGACTTGAAGATTTATATCTGGAAACTTGACTGTATCGACATTACTACACCTAACATTATCCTACCTAACGCTTACAATACAGCTAACCCAACAGACAGCCTAGCCAACAGTATCTGGGCACATGAAGCGTATGACTTTGCTAACTTCGACGATGGAGCTACTCCAAACGCAGCAGGTAGTGGATGTAGGGCAAATCTTACAGGAAACCTACTTGAGGTTACAACAGGCGGATTCTCACTACTAGGCGGCGTACTAGTACGATTTGAGCAAGCACCTGGGGTTGTAATCGAAGAAGTCTCTGTAGACTTTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
cc40f5366ccd1623576831c05488deb1397770664ef58598a2e05164361069a5
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8943
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Analysis of marine phages isolated from coral reef seawater, Okinawa, Japan Ramphul,C., Suzuki,T., Dohra,H., Casareto,B.E., Yoshinaga,K. and Suzuki,Y. 2017-10 — GenBank