Protein

View in Explore
Genbank accession
XFA11881.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MSKKLKIYNKNNELLKESQYIEGSIGEITIDNLTPDTVYKEGDFKVCWDINGKESIHVDVPGFSTLKNSTEKILIVSYNVESPTTITAQNIEGLENSIDDYFYGNLYYDVIDIVKDSTEGKIVDLKSEIRGKRISPLENKIGLFIGDSITEINGRTRNNYHGFIANRTGLEVRNLGISGTGYQDRKNVAYDITEQPDFICIMLGTNDYGVVGGNNRELGNSKEHSYGTVAGSIYYTYLQLSREFPTTPIVVLTPTPRIESNPYKENTNSKGYTLGELVQVIKDIAKLFSFPVLDLYHDSNIRVWDSNVNNVFFSSDSSPADGLHPNTAGHEWLSNLIQPFLELKAVLGSRIEKPIINHEIQDLGNGVFTKVIRPTGIFHKEDQSFIININKEDIDLSKNKVLKVVYNEHQINDPNGVLENSPYWYTLPNYEDGNDYNKTSLVSEFKKGLDTIDIVNDGRIEYLRDYMTLYFTDISNTGIKGSDINIEDNSIPTEGTTPTPSEPSMPVITPIDNEDGTFTVTLTPIKMSWKQDQSFMININESQLNLTGKKVQNIEVNGTQLTNPNETASNYFYWFSVPTSEEGTEYNRTEQISNFVTELELSNTEFDGRIVYKPIPIKITYK
Physico‐chemical
properties
protein length:622 AA
molecular weight: 70278,63840 Da
isoelectric point:4,77387
aromaticity:0,09807
hydropathy:-0,48778

Domains

Domains [InterPro]
DC_0614
ATT
1–135
DC_0614 SSF52266
IPR036514
STR
135–340
IPR036514 DC_0605
IPR036514
STR
137–347
IPR036514
IPR051532
Unmapped
143–339
IPR051532
cd00229
ENZ
143–340
cd00229
IPR013830
ENZ
144–331
IPR013830
XFA11881.1
1 622
Architecture
ATT
STR
RBD
ATT 1-135 | STR 136-347 | RBD 348-622
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XFA11881.1
1 622
Domain Start End Length (AA) Confidence
N-terminal 1 231 231 0,6704
Central domain 232 611 381 0,4878
C-terminal 612 622 10 0,2130
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-231
Central
232-611
C-terminal
612-622

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage NHSP6
[NCBI] 		3289873 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus aureus
[NCBI] 		1280 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XFA11881.1 [NCBI]
Genbank nucleotide accession
PQ220375 [NCBI]
CDS location
range 14157 -> 16025
strand -
CDS
ATGTCAAAAAAACTTAAAATTTATAATAAAAATAATGAGCTACTCAAAGAAAGCCAATATATTGAAGGTTCTATAGGGGAGATAACTATAGACAATTTAACACCTGATACTGTGTATAAAGAAGGTGATTTTAAAGTATGTTGGGATATAAATGGTAAAGAATCAATACACGTTGATGTTCCAGGATTCTCTACTTTAAAGAATTCTACTGAGAAAATACTTATAGTAAGCTATAATGTAGAAAGTCCAACAACAATAACTGCACAAAATATAGAAGGGTTAGAAAATAGTATAGATGACTATTTTTATGGTAACCTTTACTATGATGTTATAGATATTGTAAAAGATAGTACTGAAGGGAAAATAGTTGACCTTAAAAGTGAGATTAGAGGTAAACGTATTTCTCCTTTGGAAAATAAAATAGGACTATTTATCGGTGATAGTATTACTGAAATAAATGGAAGAACTCGAAATAATTATCATGGTTTCATTGCAAATAGGACTGGTTTAGAAGTCCGTAACCTAGGTATAAGTGGTACAGGTTACCAAGATAGAAAAAATGTAGCATATGATATTACAGAACAACCTGATTTTATTTGTATAATGCTAGGTACAAATGATTATGGGGTTGTCGGAGGTAATAATAGGGAGTTAGGAAATTCTAAGGAACATAGTTATGGTACTGTAGCAGGCTCCATTTATTATACTTATCTTCAGTTATCAAGAGAATTTCCTACTACACCAATAGTAGTTTTAACCCCTACACCTAGGATAGAAAGTAATCCGTACAAAGAAAATACAAATAGTAAAGGGTATACACTAGGAGAGCTTGTTCAAGTTATCAAAGATATAGCTAAATTATTTTCTTTTCCTGTTTTAGATTTATACCATGATAGTAATATAAGGGTTTGGGATTCTAATGTTAATAATGTTTTTTTCTCTTCTGATAGCAGTCCTGCAGATGGGTTACATCCTAATACAGCAGGGCATGAATGGCTTTCTAATCTTATACAGCCCTTTTTAGAATTAAAAGCAGTATTAGGTTCTAGAATAGAAAAACCTATAATAAACCATGAAATACAAGATTTAGGTAATGGTGTATTTACAAAGGTAATAAGACCAACAGGTATATTTCATAAGGAAGACCAAAGCTTCATTATTAATATAAATAAAGAAGATATAGACCTATCAAAAAATAAAGTATTAAAAGTAGTATACAATGAGCATCAAATAAATGACCCTAATGGTGTATTAGAGAATTCACCTTATTGGTACACGTTACCTAACTATGAGGATGGAAATGATTACAATAAAACTAGCTTAGTATCAGAGTTTAAAAAAGGTTTAGATACTATAGATATTGTTAATGATGGTAGGATAGAGTATTTAAGAGACTATATGACTCTATATTTTACAGATATATCTAATACTGGAATAAAAGGCTCAGATATAAATATAGAAGATAATTCTATACCAACAGAAGGAACAACCCCTACACCATCAGAACCAAGTATGCCCGTAATTACACCTATAGATAATGAAGATGGGACATTTACAGTTACACTAACACCTATTAAGATGTCTTGGAAACAAGACCAAAGTTTCATGATTAATATCAATGAAAGTCAGTTAAACTTAACAGGTAAAAAGGTACAAAATATTGAAGTTAACGGAACACAATTAACAAATCCTAACGAAACAGCAAGTAATTATTTCTACTGGTTCTCGGTACCTACAAGTGAAGAAGGTACTGAATATAATAGAACAGAGCAAATATCTAACTTTGTTACTGAGTTAGAACTTAGTAATACGGAATTTGATGGGAGAATTGTATATAAACCAATCCCTATTAAAATAACATATAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
474ac48e5ceb1eaa417a377322b097d2bdc1dfa73a33e9cd8165a10e0a879ac1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6824
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence and analysis of bacteriophage NHSP6, a potential therapeutic agent against Staphylococcus aureus infections Parida,S. and Hegde,N.R. 2025-01-01 — GenBank