Protein

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Genbank accession
YP_007517711.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 0,87
Protein sequence
MARVAVELTNFTGGELSPRLDGRTDLTKYTSGCSTLENLVVYPHGSAARRPGSTFVAEVADSDNKTRLIPFEFSTTQTYMLEFSNLKMRVYKDSGAVLEGDKTITGITAANPAVVTATSHGYSNGDEVLISGVSGMTEVNGKRFLVADKTTNTFELQDKDGVDINSTSFTAYSSGGVANKVFELATPYTTAQLFDIKFAQSADVMYITHPEHEVEKLSRTGHTAWTLTDVDFTNGPFMDANITTTTLNPASHTVGTGVAVVASAVTGINGSSGFLATDIGRLINFRDGYMKVTARADTTNITVEIIKDLGSSTASADWSLGAFSDTTGHPSCVTFFEQRLVFAGTTDQPQTIFFSKSGDYENMDANIGGTIADDDAIIYTIASNQVNAIRFMTATRTLIIGTAGGEFTVSGGGTDSAVTPTNILIKKQSNHGSANVDAIAVGNATLFLQRAKRKIRELAYNFDVDGYIAPDMTILAEHISEGGLTQIAYQQEPNQIVYGVRGDGELVGLTYQREQQVTAWHRHIFGGRFGNATITVTDYANIANGTRIVLTKADGTTTTFTSATSSTTGKFHTTTSNNQTATNLKTLIDADSDFTATVSSNVVTITETSPLSTGFLTVTSLDDSTRLTKTDEGKAVCESVAVIPTDDTEYQVYVIVKRTINGATRRFVEILNVFDFDQTDNTSFNFLDSALSYSGSAVSTISGLDHLEGQTVSVLANGATHPDKTVSSGSITLDRSSTDVKVGLAYTSLLQTMRLNAGSQNGTSQGKTKRIYDITVRMFETIGVEVGPDLSNMERIPFRSSADLMDEGIPPFTGDKEVEFRGNYETDGFIFVRQTQPLPFTILSLYPRLTTNDG
Physico‐chemical
properties
protein length:854 AA
molecular weight: 91781,89960 Da
isoelectric point:4,86936
aromaticity:0,08197
hydropathy:-0,17705

Domains

Domains [InterPro]
DC_0058
STR
1–541
DC_0058 DC_1984
IPR042302
STR
101–180
IPR042302
IPR032418
RBD
113–181
IPR032418
YP_007517711.1
1 854
Architecture
STR
RBD
STR 1-541 | RBD 695-853 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007517711.1
1 854
Domain Start End Length (AA) Confidence
N-terminal 1 529 529 0,6883
Central domain 530 730 202 0,5385
C-terminal 731 854 123 0,1942
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-529
Central
530-730
C-terminal
731-854

Taxonomy

  Name Taxonomy ID Lineage
Phage Pelagibacter phage HTVC010P
[NCBI] 		1283077 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Candidatus Pelagibacter ubique HTCC1062
[NCBI] 		335992 Bacteria > Proteobacteria > Alphaproteobacteria > Pelagibacterales > Pelagibacteraceae > Candidatus Pelagibacter

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007517711.1 [NCBI]
Genbank nucleotide accession
NC_020481 [NCBI]
CDS location
range 8086 -> 10650
strand +
CDS
ATGGCTAGGGTTGCTGTCGAACTTACAAACTTTACAGGTGGTGAACTATCGCCAAGATTAGATGGAAGAACTGATCTAACTAAATATACATCAGGTTGCTCAACATTAGAAAATTTAGTTGTCTACCCACATGGGTCAGCAGCTCGTAGACCAGGTTCTACATTTGTAGCAGAAGTTGCTGATAGCGATAACAAAACAAGATTAATACCTTTTGAATTTTCAACAACACAAACTTATATGTTGGAGTTCTCTAATTTAAAAATGAGAGTTTATAAAGATAGTGGTGCTGTATTAGAAGGAGATAAAACTATAACTGGAATTACTGCTGCTAATCCTGCTGTCGTAACTGCTACATCACATGGTTATTCAAATGGTGATGAAGTATTAATTAGTGGTGTTTCTGGTATGACAGAAGTTAATGGTAAAAGATTTTTAGTTGCAGACAAAACTACCAATACATTTGAACTACAAGATAAAGATGGTGTAGATATAAACAGCACATCATTTACTGCTTATAGTTCTGGTGGTGTGGCTAATAAAGTTTTTGAACTAGCAACACCTTATACTACTGCACAACTTTTTGATATTAAATTCGCACAATCAGCAGATGTCATGTACATTACACATCCAGAACATGAGGTAGAAAAACTATCTCGTACTGGTCATACTGCTTGGACATTAACAGATGTAGATTTTACTAATGGTCCATTCATGGATGCTAACATTACTACAACAACTTTAAATCCAGCATCACATACAGTAGGTACAGGAGTTGCTGTAGTTGCTAGTGCAGTTACAGGAATAAATGGTAGTAGTGGATTTTTAGCAACTGACATTGGAAGATTAATTAATTTTAGAGATGGTTATATGAAAGTTACTGCAAGAGCAGATACAACAAATATTACAGTAGAGATTATAAAAGATTTAGGATCATCTACTGCATCAGCAGATTGGTCTTTAGGAGCTTTTTCTGACACTACAGGTCATCCTTCTTGCGTAACCTTTTTTGAACAACGATTAGTATTTGCAGGAACAACTGATCAACCACAAACAATATTTTTTTCAAAGTCTGGTGATTATGAAAACATGGATGCAAACATTGGTGGCACAATAGCTGATGATGATGCAATCATTTATACAATCGCATCTAACCAAGTTAATGCTATCAGATTTATGACAGCAACTAGAACTTTAATTATTGGTACAGCAGGGGGTGAGTTTACTGTATCAGGTGGTGGTACTGATAGTGCTGTTACACCTACAAATATATTAATTAAAAAACAATCTAACCATGGCTCGGCAAATGTAGATGCTATAGCTGTAGGTAATGCTACATTATTTTTACAAAGAGCTAAAAGAAAAATTAGAGAACTAGCTTATAACTTTGATGTAGATGGTTACATTGCACCTGACATGACTATTCTTGCTGAACATATTAGTGAAGGTGGTCTAACACAGATCGCATATCAACAAGAACCCAATCAAATTGTTTATGGAGTAAGAGGTGATGGTGAGTTAGTAGGATTAACTTATCAAAGAGAACAACAAGTAACTGCTTGGCACAGACATATTTTTGGTGGAAGATTTGGTAATGCAACTATTACAGTTACTGATTATGCAAACATAGCAAATGGTACAAGAATAGTTTTAACAAAAGCAGATGGCACAACTACAACCTTTACTTCTGCCACATCTTCTACAACTGGTAAGTTTCATACAACAACAAGTAACAACCAAACAGCAACAAATTTAAAAACATTAATAGATGCTGACTCTGATTTTACAGCAACAGTTAGTAGTAATGTAGTTACGATTACAGAAACATCACCATTGTCTACAGGATTTTTAACTGTTACATCTTTAGATGATTCTACTCGATTAACAAAAACTGATGAAGGTAAAGCGGTATGTGAAAGTGTTGCAGTTATTCCAACTGACGATACTGAATATCAAGTTTATGTAATTGTTAAAAGAACAATCAATGGTGCGACTAGAAGATTTGTAGAAATATTAAATGTATTTGATTTTGATCAAACAGATAATACATCATTTAATTTTTTAGATAGTGCATTAAGTTATAGTGGTAGTGCTGTAAGTACAATATCAGGATTAGATCACCTTGAAGGACAAACAGTTTCTGTATTAGCTAATGGTGCAACGCACCCAGATAAAACTGTAAGCTCTGGAAGTATTACTTTAGATCGTTCTTCAACTGATGTTAAAGTTGGTTTAGCTTACACATCTTTATTACAAACTATGAGATTAAATGCTGGTTCACAGAATGGTACATCACAAGGTAAGACTAAAAGAATATATGATATAACAGTTAGAATGTTTGAAACAATAGGTGTAGAAGTAGGACCTGATCTTTCAAACATGGAAAGAATACCATTTAGAAGTTCTGCTGATTTAATGGATGAAGGTATACCACCATTTACAGGAGACAAAGAGGTAGAGTTTAGAGGTAATTATGAAACAGATGGTTTTATCTTTGTTAGACAAACTCAACCTTTACCTTTTACAATTTTATCGTTATACCCAAGATTAACTACTAATGATGGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
affc5b82f50c5bbdb13246faba994cca12bd2ed653c9830ebb2b0bf7562be07c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9257
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50