Protein

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Genbank accession
XYM58617.1 [GenBank]
Protein name
short tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MPSYTAIRTMKGLPIGSVQPWTGDIGDIPKGWLLANGAELEAVQYPLLARILKDTYGGVNFTGEFPTYSGTFRLPPTNQKGLADIDASYFNDEDISTGLRNNVFDTVEAGAIVGQFIGEIGDLGVPSSTNAVTDLLFTYTPDPDGVLLTYEANGDAPSTDVAQVYEPGDLQITQTGSGSGASFRVVQNTNGTYSTKLVSGGQLYEQDDIITILGTSFNRGEVGGTETPGTSPLNDLRLTVKATGDGFFEGNIEGQSVIPGFGIESIYIVPRKLSRNHFPQHFHVDNEGFATINKNDSGELPGLGVGVFDTPEISVTSYWYRRVPCEPLTELAGTCDPAERRQNRPNPKSIEISWGNQTGSENGFSNTIGGAGMVQPFNPGAGRYAVAFVQGTRPIEPHTPTRSRADGHGVGKNWFTDAKKLRVSDSVVSPGTSWLESLRTDGKIIAGTTQLPYSDTVNAAFSPNFDDGGGDGNATGLSDGLVTPTSVLMNSAAIHYNKTESAPGLSEVIQSHNHGGEFTIIYNGEALQAKSPITASAAPNVIPDDIPEAFQVTFTTTSPSMACVHLIRAY
Physico‐chemical
properties
protein length:570 AA
molecular weight: 60580,29190 Da
isoelectric point:4,64024
aromaticity:0,08596
hydropathy:-0,29088

Domains

Domains [InterPro]
IPR037053
ATT
4–76
IPR037053
SSF88874
STR
6–73
SSF88874 DC_0344
SSF88874
STR
6–75
SSF88874
IPR011083
ATT
16–72
IPR011083
XYM58617.1
1 570
Architecture
ATT
STR
ATT 4-76 | STR 77-570
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYM58617.1
1 570
Domain Start End Length (AA) Confidence
N-terminal 1 128 128 0,5713
Central domain 129 327 200 0,2174
C-terminal 328 570 242 0,8902
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-128
Central
129-327
C-terminal
328-570

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage Sf-FR1
[NCBI] 		3413218 Viruses >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYM58617.1 [NCBI]
Genbank nucleotide accession
PV340855.1 [NCBI]
CDS location
range 30603 -> 32315
strand +
CDS
ATGCCATCTTATACTGCTATCAGAACAATGAAAGGGTTGCCCATCGGGTCGGTGCAACCCTGGACAGGGGACATCGGTGATATCCCTAAGGGATGGTTATTGGCTAATGGTGCCGAATTAGAGGCAGTCCAATATCCTTTACTAGCAAGAATACTTAAAGACACCTATGGTGGTGTTAATTTTACTGGAGAATTTCCTACATATTCAGGAACATTTAGACTTCCCCCAACAAATCAAAAAGGTTTGGCGGATATTGATGCTTCATATTTCAATGATGAAGACATCTCTACTGGATTGAGGAATAATGTATTTGATACTGTAGAGGCAGGAGCTATTGTAGGTCAATTTATTGGCGAAATTGGGGATCTTGGTGTTCCATCATCAACAAATGCGGTAACAGATTTGTTGTTTACATATACACCAGACCCAGATGGAGTTTTATTAACATACGAAGCTAACGGAGATGCACCTAGTACAGATGTAGCTCAGGTATATGAACCAGGAGATTTACAAATTACCCAAACTGGATCTGGTAGTGGTGCATCTTTTAGAGTCGTTCAAAACACTAATGGAACTTATTCAACTAAACTTGTCAGTGGTGGTCAATTATATGAACAAGATGATATTATCACTATTCTAGGCACATCTTTTAATAGAGGAGAAGTTGGCGGGACAGAAACTCCAGGAACTAGTCCACTAAATGATCTACGTCTCACGGTAAAAGCAACTGGGGATGGTTTTTTTGAGGGAAATATTGAAGGACAATCTGTAATTCCTGGTTTTGGTATTGAATCAATATACATTGTTCCTAGAAAATTATCTAGAAATCATTTCCCCCAGCATTTTCATGTAGATAATGAAGGTTTTGCAACTATCAATAAAAATGATTCGGGAGAACTTCCTGGTCTTGGTGTTGGAGTATTTGATACTCCAGAAATTTCTGTAACATCATATTGGTATCGTAGAGTGCCTTGTGAACCTTTAACTGAGCTCGCTGGAACATGTGATCCTGCAGAAAGGAGACAAAATAGACCCAATCCTAAAAGTATTGAAATTTCTTGGGGTAATCAAACAGGATCTGAAAACGGGTTTAGTAATACTATTGGTGGTGCAGGCATGGTTCAACCGTTTAATCCTGGTGCTGGTAGATATGCTGTTGCATTTGTGCAGGGAACTAGACCCATTGAACCACACACGCCAACCAGATCCCGTGCAGATGGTCATGGTGTGGGTAAAAATTGGTTTACTGATGCAAAAAAATTGAGAGTCAGTGACAGTGTTGTTAGTCCTGGAACATCTTGGTTAGAAAGTTTAAGAACAGACGGTAAAATTATTGCTGGTACTACTCAACTACCGTATTCGGATACCGTAAATGCTGCATTTTCACCGAACTTTGATGATGGTGGTGGTGATGGAAACGCAACTGGTTTAAGTGACGGTCTTGTTACACCAACATCAGTTCTTATGAACAGTGCTGCAATTCATTACAATAAAACTGAAAGTGCTCCTGGACTTAGTGAAGTTATTCAATCTCACAATCATGGCGGTGAGTTTACAATTATATATAATGGTGAAGCATTACAAGCAAAATCACCTATTACTGCCAGTGCCGCTCCAAATGTTATCCCAGATGATATTCCAGAAGCATTTCAGGTAACATTTACAACTACATCACCTTCTATGGCATGTGTTCATTTAATTAGAGCATACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
125ba3fed35ca11f27fe647e98dec6b5df85bec40a8d07107ffcde575ee44acb
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,4629
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50