Protein

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Genbank accession
YP_009222847.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTFNTGNNVPSTDPRDLYDNAENLDKLVNGADPFYADRLGVLRESWAGMENSFTNAQEGRETAFELSQADKESRFQAFLVSSGYVSKGDYAAGVVLEERNEYVAVDAATTGTTAGLYRPGPGATLPLTLTGTWATDSASLVLLGDDVLRQELAGIGGAALVGYKADTVAGYLSKLDATRVPLSRFGLVGDDSDETALFKTALNFVNGTGATLVGDAGKTYRLTDFVQLTDANLDMNGSAIRFAHVGNKCNLQTKGRASVKNVQLIQSGTADGALGNAGQRLLFALDAHDCEFSNIRFSYTTFAHAPFNIIGKCSNIKVENITFDTGPWAMGLIAHWATVADSAAVDYSTDIAYAASVSNATTHPHNIDIVNLKGGAFNGAGTLVSLLFLSGCYNITADNVRCEQVNTLLTIYAGDYADEFAPTAEKAFICNNIRVSNPTCPQITGQKGVSISGNGTLTSRTTRCDVLIENPGLRTTTADALYGVFTERCRGVVVDGGTIQGFTNNFRLSTNTLGAELRGKMTLTEAVGAGIYSDSADQPNSNIVVGPGVHIHNNNTADGTASNQSGVYLSNTRATLIEAKFGNIGVAEKQVYSVFAASTCNDITLGAGCHTHSARGTSAYMGELAGSQFSMNLWDLGATSTTAFTTDVAGHVWSRPIGFGLRSTLLNTSATVPTTGTHKQGDEVLFRFSAASGFRGAVCTAAGTPGTWKTYGAISA
Physico‐chemical
properties
protein length:716 AA
molecular weight: 75314,88570 Da
isoelectric point:5,19096
aromaticity:0,08380
hydropathy:-0,08017

Domains

Domains [InterPro]
DC_1559
ATT
1–240
DC_1559
DC_1462
STR
177–716
DC_1462
IPR011050
STR
183–566
IPR011050
YP_009222847.1
1 716
Architecture
ATT
STR
ATT 1-240 | STR 241-716
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009222847.1
1 716
Domain Start End Length (AA) Confidence
N-terminal 1 193 193 0,9939
Central domain 194 657 465 0,9915
C-terminal 658 716 58 0,9713
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-193
Central
194-657
C-terminal
658-716

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PS-1
[NCBI] 		1573458 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas sp. 1-1-1b
[NCBI] 		1569867 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009222847.1 [NCBI]
Genbank nucleotide accession
NC_029066.1 [NCBI]
CDS location
range 45285 -> 47435
strand +
CDS
ATGACCTTTAATACCGGCAACAACGTGCCAAGCACGGACCCGCGCGACCTGTACGACAACGCCGAGAACCTAGACAAGCTGGTCAACGGCGCAGATCCGTTCTATGCCGACCGCCTGGGCGTTCTGCGCGAGTCGTGGGCCGGCATGGAGAACAGTTTCACCAATGCACAGGAAGGCCGCGAAACCGCGTTCGAGTTGAGTCAGGCTGACAAGGAAAGCCGGTTCCAGGCATTTCTGGTGTCCTCCGGCTACGTCAGCAAGGGAGACTATGCGGCAGGGGTCGTGCTGGAAGAGCGGAACGAGTACGTGGCTGTTGATGCGGCGACTACCGGCACAACTGCAGGGCTCTACCGCCCCGGCCCTGGCGCTACGCTTCCTTTGACGCTAACTGGCACCTGGGCGACCGACTCGGCCAGTCTCGTTCTGCTTGGGGATGACGTGCTGCGGCAGGAGTTGGCTGGGATAGGCGGCGCCGCGCTCGTCGGTTACAAGGCAGATACCGTTGCTGGGTATCTGTCGAAGCTGGACGCGACCCGAGTTCCGCTTAGTCGGTTTGGCCTCGTCGGTGACGACTCAGACGAAACCGCTCTATTCAAAACCGCTCTGAATTTTGTTAACGGAACCGGCGCGACCCTTGTCGGGGATGCCGGGAAAACCTATCGCCTAACCGATTTCGTCCAGCTAACGGACGCGAATCTGGACATGAACGGGTCCGCGATTCGCTTCGCTCATGTCGGGAATAAATGCAACCTGCAAACGAAGGGGCGTGCATCAGTAAAGAATGTCCAACTCATCCAATCTGGAACAGCAGATGGCGCTTTGGGAAATGCAGGACAAAGACTACTATTTGCACTCGATGCCCATGATTGCGAGTTCAGCAACATTCGTTTTTCGTACACCACATTCGCCCACGCACCATTCAACATTATAGGTAAATGTTCAAACATTAAGGTTGAGAATATCACTTTCGATACTGGCCCTTGGGCTATGGGCCTAATTGCTCACTGGGCGACTGTTGCTGACTCTGCGGCTGTGGACTACTCCACCGACATAGCCTACGCGGCCAGCGTCTCAAACGCGACTACGCACCCGCACAACATTGATATCGTCAATCTGAAAGGTGGCGCGTTCAATGGTGCCGGAACGCTTGTCTCGCTTCTGTTCCTTAGCGGGTGCTACAACATCACCGCTGACAATGTGCGATGCGAGCAGGTCAATACGCTTCTAACGATCTATGCGGGTGACTACGCGGACGAATTTGCCCCTACCGCCGAGAAGGCGTTCATCTGCAACAATATCCGGGTTTCAAACCCAACGTGCCCTCAGATCACCGGCCAGAAAGGGGTCTCGATCTCTGGAAACGGGACATTAACCAGTCGCACTACGCGTTGTGATGTTTTGATCGAGAATCCGGGCCTGCGTACTACCACGGCAGACGCGCTTTACGGCGTGTTTACCGAGCGCTGCCGGGGCGTCGTGGTCGATGGTGGAACGATCCAGGGATTCACTAACAACTTCAGGCTCTCGACCAATACGCTTGGCGCAGAGCTTCGCGGAAAAATGACGCTGACAGAAGCCGTGGGTGCCGGTATTTATAGTGACAGTGCTGACCAGCCAAACTCAAATATTGTAGTTGGTCCGGGCGTGCACATCCACAATAACAACACGGCTGACGGAACAGCGAGTAATCAGTCCGGCGTTTATCTCTCGAATACTCGGGCGACATTAATCGAGGCGAAGTTCGGCAACATCGGTGTGGCGGAAAAACAGGTTTATTCGGTATTTGCTGCATCTACATGCAACGACATAACGCTTGGCGCTGGCTGCCACACTCATTCCGCCAGAGGTACTTCCGCTTATATGGGTGAACTGGCTGGCTCACAGTTTTCCATGAATTTGTGGGATTTGGGGGCCACTTCTACCACAGCATTTACCACCGACGTAGCGGGCCATGTATGGTCACGGCCAATTGGCTTTGGTCTCCGCTCCACTCTATTGAACACCTCCGCCACGGTTCCGACTACGGGCACCCACAAACAGGGTGATGAAGTCCTATTCAGGTTTTCTGCGGCTAGTGGCTTCAGGGGGGCGGTCTGCACTGCGGCTGGAACGCCTGGTACGTGGAAGACATACGGAGCTATTTCGGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
642f3c5d4f23d2a93f6efdbe6ccc8bad5b0e5721563159d90a57be33225f0e70
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7670
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Identification and genome analysis of temperate Pseudomonas bacteriophage PS-1 from the 7,000-m depth of the Japan Trench Yoshida,M., Yoshida-Takashima,Y., Nunoura,T. and Takai,K. 2015-11 — GenBank