Protein

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Genbank accession
AFQ22525.1 [GenBank]
Protein name
putative tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAFDGSIKSLLQGVSQQVPRERLDGQVSVQLNRLSDVVNGNRRRPGARYLADVPTTSQYDDHVFASYVDVQDTANHVIINTETGQLLVISEDFSTTLHNSTQQYLVASAASAIQTATLRGDLYIANTEKAPTKVFGSTTQQDPTKAGFYFVRTPALQKDYDITLSNSTGTYTYTYRTPTGTGTGDADLAKPSYIISDLLAKINAQTGTHGITATAYDAYMFLSSNTVSLSVTTNAGSTYATGSNQSRVSVVSDLPARLPAVGNGASVAVGTTERNFVWYQYDSATSVWKEAGAYGSPTGFSNMPIRISLDGVYTVETPAYEGRLAGSDETNEDPGFIDNGVTGFGAYQGRLVILAGPEVCMSAAGNPLRWYRSTVTALLTDDPINIFSGAATSTNFRHCVQFNKDLLLFARSCQAVVPSSNAAITPQTAQIVITSGYTTDTLAQPGVVGRSVLYSMPRTEHFAGVLEIIPSNTTDSQYTSNDITAHIPRYLPGRIRSIVSSTTSNSSAFICTGDSRSLFIQDYLWSGDEKVQSAWHQWTLPYPIVCTWFVRDRVYIGMRDGTTILVVTIEPQAGNTIDSYVRPFSDVYLRVTITDRQFALPTRLRAAVGSGEGLFITFADTSMGGMWVGYESIDPTTYVVTTVRNVPDGEYFVGLRYTSVLSPTPPLVRDANGIVIGTYQSLLVRYELTLKDSGEFHAIITDSSRTLTDGNYSSLVYSSTELLPNNPTDASLGRTIIPVRAQAQDTVATFEANADTDLCILDIEYVLQYRARRKRI
Physico‐chemical
properties
protein length:776 AA
molecular weight: 84409,21960 Da
isoelectric point:5,16629
aromaticity:0,09536
hydropathy:-0,14253

Domains

Domains [InterPro]
DC_0058
STR
1–776
DC_0058
IPR058003
TTP
4–776
IPR058003
AFQ22525.1
1 776
Architecture
STR
STR 1-776
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFQ22525.1
1 776
Domain Start End Length (AA) Confidence
N-terminal 1 139 139 0,9897
Central domain 140 339 201 0,2325
C-terminal 340 776 436 0,1183
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-139
Central
140-339
C-terminal
340-776

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage PhiM1
[NCBI] 		1211386 Uroviricota > Caudoviricetes > Autographivirales > Corkvirinae > Phimunavirus
Host Pectobacterium atrosepticum SCRI1043
[NCBI] 		218491 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Pectobacterium

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFQ22525.1 [NCBI]
Genbank nucleotide accession
JX290549 [NCBI]
CDS location
range 26522 -> 28852
strand +
CDS
ATGGCCTTCGATGGCAGTATAAAGAGTCTGCTTCAAGGTGTCTCTCAACAGGTACCCCGCGAGCGCCTAGATGGACAAGTATCTGTACAGTTGAACCGTTTATCCGATGTGGTGAACGGTAACCGTAGACGCCCTGGTGCTAGGTACTTAGCAGATGTACCTACTACCTCACAGTACGATGACCATGTATTCGCCTCGTATGTAGATGTGCAGGACACAGCTAACCACGTTATCATTAATACTGAGACAGGGCAGCTACTAGTTATCTCCGAAGATTTCAGTACCACGTTGCATAATAGCACGCAGCAGTACTTGGTGGCTAGTGCAGCCAGTGCAATCCAGACTGCCACGCTCCGTGGTGATTTGTACATTGCTAATACCGAGAAGGCACCAACGAAGGTATTTGGTAGCACCACACAGCAGGACCCAACTAAGGCGGGTTTCTACTTTGTGCGTACCCCAGCCCTCCAGAAAGATTATGATATTACGCTTTCTAATAGTACTGGAACTTACACGTACACGTACCGCACACCGACAGGTACCGGTACGGGTGATGCAGACTTAGCTAAGCCTTCTTATATTATCAGCGATTTGCTGGCTAAGATTAATGCACAGACTGGTACACACGGGATTACAGCTACAGCGTATGATGCGTACATGTTCCTGAGTAGTAACACTGTCTCTTTATCTGTAACCACTAATGCTGGGAGTACTTACGCTACGGGTAGTAACCAGTCGCGTGTGAGTGTAGTATCTGACCTCCCTGCGCGTTTACCCGCTGTGGGTAATGGTGCGTCGGTAGCCGTGGGTACAACTGAGCGTAATTTTGTGTGGTATCAGTACGATTCCGCTACCTCCGTATGGAAAGAAGCCGGTGCGTACGGGAGTCCTACAGGCTTCTCAAATATGCCTATTCGTATCTCATTGGACGGTGTCTACACAGTAGAAACCCCAGCATATGAGGGCCGTCTGGCAGGTTCAGATGAAACCAACGAGGACCCCGGCTTTATTGATAATGGGGTAACTGGGTTTGGTGCGTACCAAGGCCGCTTAGTGATTCTAGCGGGGCCAGAAGTATGTATGAGCGCAGCAGGTAACCCATTACGTTGGTACCGCAGTACAGTAACCGCGTTGTTAACTGACGACCCTATCAATATCTTTTCAGGTGCTGCTACTAGTACTAACTTCCGACACTGCGTACAGTTCAACAAGGACTTACTCCTGTTTGCGCGCTCCTGTCAGGCTGTAGTACCCAGTAGTAATGCGGCTATTACTCCACAGACTGCCCAGATAGTAATCACGTCGGGTTATACTACCGATACTCTGGCACAGCCGGGTGTGGTGGGGCGTTCTGTACTGTACAGTATGCCGCGTACTGAACACTTTGCGGGTGTATTGGAGATTATTCCAAGCAACACCACAGACTCTCAGTACACCTCGAATGATATTACCGCCCATATCCCAAGGTACTTGCCGGGGCGCATCCGTAGTATTGTATCTAGTACCACTAGCAACTCCAGTGCATTCATTTGTACAGGGGATAGTCGTAGCCTGTTCATTCAGGACTACCTGTGGTCTGGTGATGAGAAGGTACAAAGTGCATGGCACCAGTGGACTTTACCATACCCTATTGTGTGTACATGGTTCGTTCGTGACCGTGTGTACATCGGTATGCGGGATGGTACCACTATCCTAGTGGTAACGATTGAACCACAGGCGGGTAACACGATAGACAGCTATGTACGTCCGTTCTCTGATGTGTACCTACGGGTCACTATCACCGATAGGCAGTTCGCCCTACCTACCCGTTTACGCGCCGCAGTGGGTAGCGGAGAAGGTCTGTTCATTACCTTTGCTGATACCAGTATGGGTGGAATGTGGGTGGGGTACGAGAGTATCGACCCAACGACGTACGTAGTAACTACAGTACGTAATGTTCCCGATGGTGAGTACTTCGTAGGGTTAAGATACACTAGTGTACTCAGTCCAACACCACCATTAGTACGAGATGCTAACGGTATTGTTATTGGAACATACCAATCATTACTGGTGCGGTACGAGCTTACGCTGAAAGATTCAGGAGAGTTCCACGCTATTATTACCGATAGTTCTCGTACCTTAACGGATGGTAACTACTCCAGCCTAGTGTACAGTAGCACTGAGTTACTACCAAACAATCCAACCGATGCTTCACTAGGTAGGACTATTATACCGGTACGTGCTCAAGCGCAGGATACTGTGGCTACCTTTGAAGCTAATGCTGATACCGACTTATGTATCTTAGATATTGAGTACGTCCTGCAATACAGGGCACGGAGGAAAAGAATATGA

Genome Context

Genome Context

Tertiary structure

1 / 2
PDB ID
Source
Method
Resolution
Oligomeric State

Literature

Title Authors Date PMID Source
Bacteriophage PhiM1 of Pectobacterium evolves to escape two bifunctional Type III toxin-antitoxin and abortive infection systems through mutations in a single viral gene Blower,T.R., Chai,R., Przybilski,R., Chindhy,S., Fang,X., Kidman,S.E., Tan,H., Luisi,B.F., Fineran,P.C. and Salmond,G.P. 2017 28159786 GenBank