Protein

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Genbank accession
QDH50551.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,82
TF
Evidence RBPdetect2
Probability 0,91
Protein sequence
MAIDKDFVVKNGLQVNENLIFADSDNDKVGLGTTTPNRKLVVIGNAEVSSDLAVGTTITAQRGAFTGIITANDGIDVGVGGTFVSINKLDAKIGIGSTSPVYTLDLYGPVSTGTTAAYIFGDVEVTGTIKGNRLEGQISAGGTVGFTNVTVDNVLDANNAEVYTKFNIEEVTSDTFRFLVAGDPPGIGFTQNTDNPEIYVSRGQKYEFHLDSGGFPFYLKTQPTADLNNQYSDGVTNNGAQVGVVTFKVPFNSPNILYYQASNVAGMGGTIYVDNDNKTYTVGVLTVSQFLDSNTQADFEQIYVSGIGTINNLKGPDFSVSSGILTVRQDQTALIGVSTGADRVSLQEKSDNVAYQVPFSDTLGIGSNYQNLYVDSEDGQMSYNPSTNRLTVNRVIGNLSGIATGADNINIDSSSANTKFQVTFSNPGSADYQRQLIDSDSDRLTYNPSTNTLSSTNITATTVTAGLAGTATNADNINVDKKSNNTTYQVLFSDNQGAGYQRPYIDSQSGQFTYNPSTNTLTAANIAGAGDNLTNLDGSNISQGTINADRIPDASTTAQGVVQLYDTFPPNSSSTTRAATANLVTDVYDEVRTAVIPAGTTMLFYQASAPSGWTKLTTQNNKALRVVSGSGGGTGGNNTFTSTFATRSVPLLRHNHTASSGNQSANHSHGVTVESGGSHTHGISDPGHNHDYSAPSGNKEFGNRSANAAASTRANFVSGNRLTGISINSGGSHNHGTSVGINNANHTHGITVDNEGTSGASMDFRVQYIDVIIASKDAYP
Physico‐chemical
properties
protein length:780 AA
molecular weight: 81913,14840 Da
isoelectric point:4,76836
aromaticity:0,07692
hydropathy:-0,32833

Domains

Domains [InterPro]
DC_0856
STR
8–764
DC_0856
IPR005068
STR
555–594
IPR005068
QDH50551.1
1 780
Architecture
STR
STR 8-764 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDH50551.1
1 780
Domain Start End Length (AA) Confidence
N-terminal 1 72 72 0,9586
Central domain 73 548 477 0,0604
C-terminal 549 780 231 0,8922
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-72
Central
73-548
C-terminal
549-780

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-B43
[NCBI] 		2484638 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp. MW02
[NCBI] 		1620844 Cyanobacteriota > Cyanophyceae > Synechococcales > Synechococcaceae > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDH50551.1 [NCBI]
Genbank nucleotide accession
MN018232.1 [NCBI]
CDS location
range 86372 -> 88714
strand +
CDS
ATGGCGATAGATAAGGATTTTGTCGTTAAAAATGGTTTACAGGTCAACGAAAATTTAATTTTTGCTGATTCTGACAATGATAAAGTTGGTCTAGGTACTACCACCCCCAATAGAAAATTAGTTGTAATTGGTAACGCTGAGGTAAGTTCAGACCTTGCAGTAGGTACCACAATTACAGCTCAAAGAGGTGCCTTTACTGGTATCATTACTGCCAATGACGGTATTGATGTTGGTGTAGGTGGTACTTTTGTATCGATTAACAAACTCGACGCTAAGATTGGTATCGGTTCAACCTCACCAGTTTATACTTTAGACCTTTATGGTCCCGTATCCACTGGTACAACAGCAGCATATATTTTTGGTGATGTAGAAGTCACTGGTACGATTAAGGGTAATCGACTCGAAGGTCAGATTTCTGCTGGTGGTACAGTTGGCTTTACTAATGTCACTGTAGATAATGTACTTGATGCAAATAATGCAGAGGTATATACTAAGTTTAATATTGAAGAAGTCACTAGTGATACCTTTAGATTCTTAGTTGCGGGTGACCCACCTGGTATTGGTTTCACTCAGAACACTGACAATCCAGAAATTTATGTTTCAAGAGGTCAGAAATATGAGTTCCACCTTGACTCTGGTGGTTTCCCATTCTACCTTAAGACACAACCAACTGCTGACCTGAATAATCAGTATTCAGATGGTGTCACTAACAATGGTGCTCAGGTTGGTGTTGTTACCTTCAAGGTTCCATTCAATTCACCTAACATCCTGTACTATCAAGCATCAAATGTTGCTGGTATGGGTGGTACGATTTATGTCGATAATGATAATAAAACCTATACTGTTGGTGTTCTGACAGTATCTCAGTTCTTAGATAGTAACACTCAAGCAGACTTTGAACAGATTTATGTCTCAGGTATTGGTACTATCAATAATCTGAAAGGTCCAGACTTCAGTGTCAGTTCTGGTATTCTGACTGTCAGACAAGACCAGACTGCTCTGATTGGAGTTTCAACTGGTGCTGATAGAGTCAGTCTTCAAGAGAAGAGTGATAATGTAGCATATCAAGTTCCATTTAGTGATACTTTAGGTATTGGTTCAAACTATCAAAACTTGTATGTTGATAGTGAAGATGGACAGATGTCCTACAACCCATCAACCAATCGACTGACTGTCAATAGAGTTATTGGTAACTTGTCTGGTATCGCAACAGGTGCTGACAATATTAATATTGACTCAAGCAGTGCAAATACTAAATTCCAAGTTACATTTAGTAACCCAGGAAGTGCAGACTATCAGAGACAATTGATTGATAGTGATAGTGATAGATTAACTTATAATCCTTCTACAAATACACTGTCATCAACCAATATCACAGCCACAACGGTTACTGCTGGTTTGGCTGGTACTGCAACCAATGCAGACAATATTAATGTAGATAAAAAATCTAATAATACAACTTATCAGGTATTATTCAGTGACAATCAAGGAGCTGGTTATCAAAGACCTTATATTGACTCTCAATCAGGTCAATTCACATATAATCCATCTACTAACACTCTGACTGCAGCAAATATTGCTGGTGCTGGTGATAATCTTACAAACCTTGATGGTTCAAACATTTCACAAGGTACTATCAATGCAGATAGAATTCCTGATGCATCAACAACCGCTCAGGGTGTAGTACAACTTTATGATACTTTCCCACCTAACAGTTCATCAACTACCAGAGCAGCAACAGCAAATCTTGTCACCGATGTTTATGATGAAGTAAGAACTGCAGTGATACCTGCAGGAACGACTATGTTGTTCTATCAGGCATCTGCACCATCAGGTTGGACTAAACTAACAACTCAGAATAATAAGGCACTTAGAGTTGTGTCTGGTAGTGGTGGTGGTACGGGTGGTAACAATACGTTTACCTCAACTTTTGCAACAAGAAGTGTTCCACTACTGAGACACAATCACACTGCTTCATCTGGTAATCAGAGTGCTAATCACAGCCATGGTGTTACAGTTGAAAGTGGTGGTTCACACACTCACGGTATTTCTGATCCTGGCCACAACCACGATTATTCCGCACCTAGTGGAAATAAGGAGTTTGGTAATAGAAGTGCTAATGCTGCAGCATCTACCCGTGCTAATTTTGTTAGTGGCAATAGACTAACTGGAATCTCAATTAACAGTGGTGGAAGTCATAATCATGGAACCAGTGTAGGTATTAATAATGCAAACCACACTCACGGTATTACCGTTGACAATGAAGGTACCTCTGGAGCTTCAATGGACTTCAGAGTTCAATATATTGACGTAATCATTGCATCTAAGGATGCCTATCCTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
587c05ba6ead720b9b6d7f4135688273b7d6eb85476cca9754b453660b4ff72d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5607
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, characterization and genome sequencing of the novel cyanophage S-B43 from the Bohai Sea, China Wang,M. 2020-10 — GenBank