Protein

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Genbank accession
CCI88787.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MSLSVEQKIAIRELSKTILADGISEVVFEKKDGSIRVMKSTRDKTVISGLVGESVYESYINPEKPRAESVDMIPVFDVEAKAWRGFSLDKLISINSTKIETLRELANV
Physico‐chemical
properties
protein length:108 AA
molecular weight: 12046,76290 Da
isoelectric point:5,53614
aromaticity:0,05556
hydropathy:-0,11759

Domains

Domains [InterPro]
IPR024401
STR
19–92
IPR024401
CCI88787.1
1 108
Architecture
STR
STR 19-92 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage phiR1-RT
[NCBI] 		1206558 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Tegunavirus
Host Yersinia enterocolitica
[NCBI] 		630 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
CCI88787.1 [NCBI]
Genbank nucleotide accession
HE956709.1 [NCBI]
CDS location
range 134769 -> 135095
strand -
CDS
ATGAGCTTATCAGTTGAACAAAAAATTGCTATTCGTGAATTGTCTAAAACTATTCTGGCTGATGGCATATCTGAAGTAGTATTTGAAAAGAAAGACGGCAGTATTCGTGTAATGAAGTCTACCAGAGATAAAACCGTTATTTCTGGTTTAGTTGGTGAATCCGTTTATGAAAGTTATATTAATCCAGAAAAGCCACGTGCTGAATCTGTAGATATGATTCCTGTATTTGATGTTGAAGCTAAAGCATGGCGTGGATTTAGCCTCGATAAATTGATTTCTATTAATTCTACTAAGATCGAAACTCTTCGTGAATTAGCTAATGTATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
b09e58ab5b0afb2717fc8f1e1a2006d80769acd9153709c4984769f9b2bf3c3b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8044
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of five bacteriophages specific for Yersinia species Skurnik,M., Nawaz,A., Happonen,L., Butcher,S. and Mattinen,L. 2012 — GenBank