Protein

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Genbank accession
XYO02500.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,67
Protein sequence
MAIQNRPDEKIFASSAGSQEVSAFPNIEKGWGFTFEETGGIPTMEHFNALFKRIDEHFNYMLQRGLPEWSATLDYPAGAYVQYDNKTYRSKKASKNQRPDIVDSTYWVRWSIDYKEVSSFIDEAGKKGVPLGSVVAFPKHITPHGYLKAIGGTFNQATYPDLYVANGNSNILPNLHRSDVGMTAYFVTDSIPDGWIAFDSIRTTVTQQSYPELYQYLVAKYGSIAQVPLAEDRFIRNAGNGLNVGATQNDEIKKHTHRTPLSHNSNDYQQMSQYYNDVSSVLTAPFVMALDGSDGTNNVYARQKNNLAAEGGEETRPKSIVLKLCIKAKNSFDDVQFWIKAFGEVVNAGSLDIGALAQDLQNKANISHAHQVSDIVNFDQKVLEVVSDSFSLQKIGTFEIRKYHDGTMIQTNKVNLSDAQVNSKREFNWAVSFTERPVVVHSLDMGVYRHNDVSLTTATVHDESTNTRCVFATREWTATFQTEVHLIFIAIGRWK
Physico‐chemical
properties
protein length:495 AA
molecular weight: 55582,46060 Da
isoelectric point:6,11448
aromaticity:0,11111
hydropathy:-0,42061

Domains

Domains [InterPro]
DC_1934
STR
1–480
DC_1934
G3DSA:2.10.10.20
ATT
55–112
G3DSA:2.10.10.20 IPR037053 SSF88874
IPR036573
STR
66–108
IPR036573 SSF88874
cd12215
STR
67–100
cd12215
XYO02500.1
1 495
Architecture
STR
ATT
STR
ATT
STR
STR 1-54 | ATT 55-112 | STR 113-127 | ATT 128-178 | STR 179-480 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYO02500.1
1 495
Domain Start End Length (AA) Confidence
N-terminal 1 375 375 0,5605
Central domain 376 484 110 0,0039
C-terminal 485 495 10 0,9985
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-375
Central
376-484
C-terminal
485-495

Taxonomy

  Name Taxonomy ID Lineage
Phage Pasteurella phage Pmp4
[NCBI] 		3127680 Viruses >
Host Pasteurella multocida
[NCBI] 		747 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pasteurellales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYO02500.1 [NCBI]
Genbank nucleotide accession
OR544135.1 [NCBI]
CDS location
range 4114 -> 5601
strand -
CDS
ATGGCAATCCAAAACAGACCTGATGAGAAGATTTTTGCGAGTAGTGCTGGCTCACAAGAAGTTAGTGCATTTCCTAATATTGAAAAGGGGTGGGGGTTTACATTTGAAGAGACTGGCGGCATCCCGACAATGGAGCATTTTAATGCTTTATTTAAGCGCATTGATGAGCACTTTAATTATATGCTACAACGCGGCTTACCTGAGTGGTCGGCAACATTAGATTATCCTGCTGGTGCATACGTTCAATACGATAATAAAACTTATAGATCTAAAAAGGCGAGTAAAAATCAACGTCCGGATATTGTTGATTCTACTTACTGGGTGAGATGGTCAATTGATTATAAAGAGGTAAGTAGTTTCATTGACGAAGCGGGTAAAAAAGGTGTGCCGCTTGGCTCTGTTGTCGCTTTCCCAAAACACATTACACCGCATGGGTATTTAAAAGCGATTGGTGGTACATTCAATCAAGCAACATATCCTGATTTATATGTTGCCAACGGAAATAGCAACATCCTACCAAATTTACACCGCAGTGATGTTGGTATGACAGCATATTTTGTGACAGACTCTATCCCTGATGGCTGGATTGCGTTTGATTCTATTAGAACAACAGTTACACAGCAGAGCTATCCTGAACTTTATCAGTATTTAGTTGCAAAATACGGCTCAATTGCACAAGTGCCACTTGCAGAAGATCGCTTTATTCGTAACGCGGGCAATGGGTTGAATGTTGGTGCAACACAAAATGATGAAATCAAAAAACATACACATAGAACACCGCTTTCTCATAACAGCAACGATTATCAACAAATGTCGCAGTACTACAATGATGTTAGCTCTGTTTTAACTGCACCGTTTGTCATGGCGTTAGATGGTTCTGACGGAACTAACAACGTTTATGCTAGACAGAAAAATAATTTAGCGGCAGAAGGTGGCGAAGAAACACGACCTAAATCAATTGTTTTAAAACTCTGTATCAAGGCTAAAAACAGCTTTGATGATGTGCAATTTTGGATTAAAGCTTTCGGTGAAGTTGTAAACGCAGGTTCTTTAGATATTGGGGCACTAGCACAAGACTTGCAAAATAAAGCAAACATTAGTCACGCGCATCAAGTAAGTGACATTGTTAATTTTGATCAAAAAGTTCTAGAAGTTGTGAGCGATTCATTCTCATTACAAAAAATCGGTACATTTGAGATAAGAAAATATCATGACGGCACAATGATTCAAACAAACAAAGTGAATTTATCAGATGCACAAGTAAATTCTAAACGTGAATTTAACTGGGCAGTATCTTTCACAGAAAGACCAGTTGTTGTTCATTCATTAGATATGGGGGTATATCGACACAATGATGTATCGTTAACAACAGCAACTGTTCACGATGAATCAACTAACACGAGATGTGTATTTGCTACAAGAGAGTGGACGGCAACATTTCAAACAGAAGTTCATTTGATATTCATTGCAATCGGGAGATGGAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e48b3c9501674cfab68e0e52f26d7d204a74088e2d2f225388996c765b321f16
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7934
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50