Protein

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Genbank accession
YP_010661396.1 [GenBank]
Protein name
tail fiber protein host specificity
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,60
Protein sequence
MTLPTSGPISIDDVATEFSLSTPVSMSDLYGLAVGIPTSGEISLSMFRGKGTKIEKIVSTSIQNLNLTALFTNEELNAPFDKLVFIDPGVTIGSLDPSLPALRSGVFLGDLFIENHGNIFGAGGAGGTNGSPGRNGGDAILLDVAGVVIDNYGFIRGGGGGGGSGGVGGEGGDGVYSFTNRDPKIGNYYSRTAPKFYVYEYRFNGILGNVQWFWNDVQISSAFSNDYIQIGEVRYYKGEQRSYQRKENVASSVQEYTYYAIHQEYPISYGTDGGAGGDYKGAFSDGGHGQGYLISATKGKQGFAGEPGGTNAGKGGDGGTGGDGGTWGAPGSAGLSGKDGTNGNVSNGTAGQSGFAGGVAGRAITSNQIYTVNNFGTIDGSY
Physico‐chemical
properties
protein length:382 AA
molecular weight: 39274,46330 Da
isoelectric point:4,75375
aromaticity:0,10995
hydropathy:-0,27749

Domains

Domains [InterPro]
DC_1679
STR
1–195
DC_1679 DC_0422
IPR007932
RBD
113–167
IPR007932
YP_010661396.1
1 382
Architecture
STR
RBD
STR 1-195 | RBD 196-382
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_N34
[NCBI] 		2509586 Uroviricota > Caudoviricetes > Pootjesviridae > Trinifflemingvirus > Trinifflemingvirus N34
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010661396.1 [NCBI]
Genbank nucleotide accession
NC_070884.1 [NCBI]
CDS location
range 7668 -> 8816
strand -
CDS
GTGACACTTCCTACTTCAGGACCAATCTCTATCGATGATGTGGCAACGGAGTTCAGTCTCTCGACTCCGGTGAGCATGTCTGATCTGTACGGTCTCGCTGTCGGTATCCCTACCTCCGGCGAAATCTCTCTGAGCATGTTCAGAGGTAAAGGAACCAAGATCGAGAAGATCGTTTCGACCTCTATTCAGAACCTCAATCTGACTGCTCTGTTCACGAACGAAGAACTGAATGCTCCTTTCGACAAGCTCGTGTTCATCGATCCTGGCGTCACTATCGGCTCTCTCGATCCGTCTCTTCCTGCTCTGAGATCTGGAGTCTTCCTCGGTGACCTGTTCATCGAGAACCACGGAAACATCTTTGGTGCTGGCGGAGCTGGAGGAACGAACGGTTCTCCTGGTCGTAACGGTGGTGATGCAATCCTTCTCGACGTTGCAGGTGTCGTCATCGACAACTACGGCTTCATCCGTGGTGGTGGTGGCGGAGGTGGCTCCGGCGGAGTAGGAGGCGAAGGAGGCGACGGTGTCTATTCGTTCACGAACCGGGATCCCAAGATCGGGAACTACTATTCCAGGACTGCTCCGAAGTTCTACGTCTACGAGTATCGCTTCAACGGCATCCTAGGTAACGTCCAGTGGTTCTGGAACGACGTACAGATCTCGAGTGCCTTCTCGAACGACTACATTCAGATTGGTGAAGTTCGCTACTACAAGGGTGAGCAGAGATCCTATCAGAGGAAAGAAAACGTTGCTAGTTCTGTCCAAGAGTATACGTACTACGCTATCCATCAAGAATATCCGATCTCGTACGGAACAGACGGTGGAGCCGGCGGAGACTACAAAGGCGCCTTCTCGGACGGCGGTCATGGGCAAGGCTACCTGATCTCCGCTACGAAAGGCAAGCAAGGTTTCGCCGGTGAGCCTGGTGGCACGAATGCTGGCAAAGGCGGAGACGGCGGAACTGGCGGAGACGGTGGCACATGGGGTGCTCCAGGTTCTGCTGGTCTGTCAGGCAAAGACGGAACGAACGGAAATGTTTCGAACGGGACAGCTGGTCAGTCTGGCTTTGCTGGTGGTGTAGCCGGAAGAGCTATCACTTCGAACCAAATATACACTGTAAACAACTTCGGTACAATTGACGGAAGCTACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
8e11b3302cd590f888e341294ca972bc7f46f636ee40bd866ccdb661dd043f9f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8060
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank