Protein

View in Explore
Genbank accession
WNA15941.1 [GenBank]
Protein name
EPS depolymerase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MDINSDLKVQGNVNVNGTFSVTGNIVGSIELDPQADNALIETNNGYYVAPSQPGAPGKSSYELAQEQGYPGTLSDYIAKETAAGTSAANAKASETNAKTSENNAKTSETNSASSATSASTYASNAKTSETNSKTSETNAKTSETNSASSATAAATSATNAKTSETNSATSATNAQNYYNLTIANSIDSIATLKTMQPTLANPVVAVRGYNAGTNIGGGNFYYVADTSTVEDGGLFFRVDSKGGWRRATPAVDDLDITHFGAMCDGKTDDAAAIIKMHKWSLATGGNFGPGVILPAGSTAVDVVDLGTAEISSFKIRGPERAYGHLVSATLVPFSKTQTTPMFTFCARRMEVSNLRLLGTGTVQPFFKNTVTRGAFARVHSIRTDYIGGRAFQLIDTLDCKFDQIYSYNGNAAFLWVTWSNLSPGSWDHPTAIEISNFNFNSHKNEYAVSAIRAGQSMMYNGWFDHCEYPFDISQGGWTLDNITMENATNPAGIQYSKLVQINCRWEQGKGLDNTVSGYTQDMDLANGGSGNMPSWVTNGYDQGVVEIKPAGAKFDCGISNEFQYSNLILTNSSNAEQWVQVGRICTQGQGSTWKMNILGTNGWDSANSALVRPAGTNFGGGNATIYFESKSPSSQNTTTGEMHWYGEGSCPIKAVKYLHSWGYCTVYVKMGSYTKSAAVFLECNGTSRLQTGNPFWLRADNIIMTEDEVLAVSNIATAVKRWAINSGDYDAPGIGMDLDSGKVVLNSTYVDNAASRHLQVSFYGVDQYIPLQATNQSIRIPVYAYADLPSPSTNVYGMVLCRNTTLAQPLQPLFSNGSTWYLMSDPSNSTWRPTS
Physico‐chemical
properties
protein length:835 AA
molecular weight: 89624,05410 Da
isoelectric point:5,24797
aromaticity:0,09820
hydropathy:-0,33749

Domains

Domains [InterPro]
DC_0608
ATT
55–275
DC_0608 DC_0716
IPR011050
STR
248–494
IPR011050
WNA15941.1
1 835
Architecture
ATT
STR
ATT 55-275 | STR 276-797 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WNA15941.1
1 835
Domain Start End Length (AA) Confidence
N-terminal 1 266 266 0,8678
Central domain 267 556 291 0,9882
C-terminal 557 835 278 0,9276
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-266
Central
267-556
C-terminal
557-835

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage XaC1
[NCBI] 		3073039 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Xanthomonas vesicatoria
[NCBI] 		56460 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WNA15941.1 [NCBI]
Genbank nucleotide accession
OR258281 [NCBI]
CDS location
range 161036 -> 163543
strand -
CDS
ATGGATATAAACAGTGATTTAAAAGTACAAGGTAATGTGAATGTAAACGGTACTTTCAGTGTAACTGGTAATATTGTTGGTAGTATAGAATTAGATCCGCAAGCTGATAATGCGTTAATTGAAACTAATAATGGTTATTATGTTGCTCCTAGTCAACCGGGTGCTCCAGGTAAAAGTTCATATGAATTAGCACAGGAACAGGGTTATCCGGGTACTTTGTCTGATTACATTGCAAAAGAAACTGCTGCTGGTACTAGTGCTGCAAACGCGAAAGCTTCTGAAACAAATGCTAAAACCTCTGAGAATAATGCTAAAACTTCAGAAACTAATTCTGCAAGTTCTGCAACATCTGCAAGTACTTACGCTTCAAATGCTAAAACCTCTGAAACTAACTCCAAAACTTCAGAGACTAATGCTAAAACCTCTGAAACTAATTCTGCAAGTTCAGCTACCGCAGCAGCTACCAGTGCTACTAATGCTAAAACTTCAGAAACCAACTCCGCAACAAGTGCAACTAACGCACAAAACTATTACAATCTAACTATTGCTAATAGTATTGATTCTATTGCTACTCTTAAAACAATGCAACCAACTTTAGCAAATCCAGTTGTAGCAGTACGTGGTTATAATGCTGGTACTAATATTGGTGGTGGTAATTTCTATTATGTTGCTGATACCAGTACCGTTGAAGATGGTGGTTTGTTCTTCCGTGTTGATAGTAAAGGTGGTTGGAGACGTGCAACCCCAGCAGTTGATGACTTAGATATTACTCACTTTGGTGCAATGTGTGATGGTAAAACTGATGATGCTGCTGCCATTATCAAAATGCATAAATGGTCATTAGCTACTGGTGGAAACTTTGGACCGGGTGTAATTCTTCCTGCTGGGAGTACTGCGGTTGATGTTGTTGATTTGGGTACTGCCGAAATTTCAAGTTTTAAAATTCGTGGTCCAGAACGTGCTTATGGTCACTTAGTTTCTGCTACTTTAGTACCATTCAGTAAGACTCAAACTACTCCAATGTTTACCTTCTGTGCTCGTCGTATGGAAGTATCAAACTTACGTTTATTAGGTACTGGTACAGTTCAGCCGTTCTTTAAGAATACAGTTACACGCGGTGCATTCGCACGTGTACACAGTATTCGTACTGATTACATTGGCGGTCGTGCATTCCAGCTAATTGATACATTGGACTGTAAGTTTGACCAAATCTATTCTTATAACGGTAATGCTGCATTCCTGTGGGTAACTTGGTCTAACTTATCTCCGGGTTCTTGGGATCACCCTACTGCTATTGAAATTAGTAACTTCAACTTTAACTCCCACAAAAATGAATATGCAGTAAGTGCAATTCGTGCTGGTCAGTCAATGATGTATAATGGTTGGTTTGACCACTGTGAATATCCATTTGACATTTCTCAGGGTGGTTGGACGCTTGATAATATTACAATGGAAAACGCTACTAATCCAGCAGGTATTCAATATAGTAAATTAGTACAAATAAACTGTCGTTGGGAACAAGGTAAAGGACTAGACAATACTGTTTCTGGATATACACAGGATATGGATTTAGCCAATGGTGGTTCTGGTAATATGCCTTCATGGGTAACAAATGGATATGACCAAGGTGTTGTTGAAATAAAACCCGCTGGTGCTAAATTTGATTGTGGTATTTCTAACGAATTCCAATATTCTAACCTAATTCTTACTAACAGTTCTAACGCTGAACAGTGGGTACAAGTAGGTCGTATTTGCACACAAGGTCAGGGTAGTACTTGGAAAATGAATATTTTAGGTACTAACGGTTGGGATAGTGCAAATAGTGCATTAGTCAGACCAGCAGGTACTAACTTTGGCGGCGGTAATGCTACGATTTATTTTGAAAGTAAATCTCCATCATCACAAAATACTACTACCGGCGAAATGCATTGGTATGGTGAAGGTTCATGTCCTATTAAAGCAGTTAAGTATCTACACTCATGGGGTTATTGTACTGTATATGTTAAAATGGGTTCTTACACTAAATCAGCAGCAGTGTTCTTAGAATGTAATGGTACATCTCGTCTTCAAACTGGTAACCCATTTTGGCTAAGAGCCGATAATATTATTATGACAGAAGATGAAGTACTAGCTGTAAGTAATATTGCAACTGCTGTTAAGCGTTGGGCTATCAACTCAGGAGATTATGATGCTCCTGGTATTGGAATGGACTTAGATTCTGGTAAAGTAGTATTGAACTCTACTTATGTAGATAATGCTGCTTCAAGACACTTACAGGTATCGTTCTATGGTGTTGACCAGTATATTCCATTACAGGCGACTAACCAATCAATTCGTATTCCAGTATATGCTTATGCTGATTTACCATCCCCTAGTACTAACGTATATGGTATGGTACTTTGCAGAAATACGACTTTAGCACAACCATTGCAACCACTGTTCTCTAATGGTTCAACTTGGTACTTAATGTCGGACCCATCTAATAGTACTTGGCGTCCAACTAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
65b89b1899f7f69f85dc513b223067d170314a5f9a1dc266db8976d641d52416
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2910
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of two novel jumbo bacteriophages infecting Xanthomonas vesicatoria isolated from agricultural regions in Mexico Rubi,L.M., Villicana,M.C., Amarillas,L.A., Carrillo,A. and Leon,J. 2014-03-01 — GenBank