Protein

View in Explore
Genbank accession
XWX31432.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MSLQFTQITDKHTLKDLTTQVNNIGLELTKSDNIFEVTDDLTTDINKSQKVKLTNDSGGAKRPNSISFLHDIKEPGYYYIHQSVLQRVPDRPTVAPRDALLVVYPVYTTGTAVIVQQLYTISFSDTELSSVYRYVNNTTASNWQHNVLLPGNKSRTYANMDVLDIDTPGTHFIFRGSNLPVRAGSGLISVVSSEYYGKVFIYVDNETNKIYTSNSNGSGTLNWKSQIEVKDLKPFLLSDVDDNLAVKGTNIGIKVSDNKSFGNFIQDYVTRTNQHVLTFYCQGGVVGNPAGSDSCRGLFISSASEDDFGYGVYYAISNGGRLYTGTVTNSSWNESQKYPIMKELWTGTHNFKDTNKKEQMTDSIDNYNYVEIYTRYRALQNTKGTDKTGTLCHKFYVDGDGIYVCSGSYVSGDPDRIGVEYYRVTLTISGDTWTIKDSAVNNNKNQYIKRVVGLSI
Physico‐chemical
properties
protein length:456 AA
molecular weight: 50966,14000 Da
isoelectric point:6,25822
aromaticity:0,10965
hydropathy:-0,44737

Domains

Domains [InterPro]
DC_1773
STR
10–246
DC_1773 IPR057110
DC_0448
STR
197–456
DC_0448
XWX31432.1
1 456
Architecture
STR
STR 10-456
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XWX31432.1
1 456
Domain Start End Length (AA) Confidence
N-terminal 1 230 230 0,8223
Central domain 231 429 200 0,0346
C-terminal 430 456 26 0,9964
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-230
Central
231-429
C-terminal
430-456

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage PG-2021_1
[NCBI] 		2815605 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus epidermidis
[NCBI] 		1282 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XWX31432.1 [NCBI]
Genbank nucleotide accession
MZ417323.1 [NCBI]
CDS location
range 97160 -> 98530
strand -
CDS
ATGTCCTTACAATTTACACAAATAACAGATAAACATACATTGAAAGACTTAACAACTCAAGTTAATAATATTGGGCTTGAGTTAACTAAGTCAGACAATATATTTGAAGTAACTGATGACTTAACCACAGACATTAATAAGTCACAGAAAGTTAAATTAACTAATGATTCAGGTGGAGCTAAAAGACCTAATAGTATTAGTTTCCTTCATGATATTAAAGAACCTGGATATTATTATATCCATCAAAGTGTACTACAACGAGTTCCTGACAGACCTACAGTAGCACCTCGTGATGCACTTTTAGTTGTATACCCAGTATATACAACAGGTACAGCTGTAATTGTACAGCAGTTATATACTATTAGTTTCTCTGATACAGAATTAAGTTCGGTGTATAGATATGTTAATAATACAACAGCTTCTAACTGGCAACATAATGTGTTACTCCCAGGAAACAAAAGTAGAACATACGCTAACATGGATGTATTAGATATTGATACACCAGGAACACATTTTATATTCAGAGGCTCTAATTTACCTGTAAGAGCTGGTTCTGGTTTAATATCAGTTGTATCATCAGAATATTATGGAAAAGTATTTATTTATGTTGACAATGAAACTAATAAGATATATACTAGTAATAGTAACGGTTCAGGTACATTAAATTGGAAATCACAAATAGAAGTAAAAGATTTAAAACCTTTTTTACTGTCCGATGTAGATGATAACTTAGCTGTTAAAGGTACTAACATAGGTATTAAAGTATCAGATAATAAATCTTTTGGTAACTTTATACAAGATTACGTAACAAGAACTAATCAGCATGTTTTAACATTTTATTGTCAAGGTGGCGTAGTAGGAAACCCTGCGGGGTCAGATTCTTGTAGAGGGTTATTTATTTCTAGTGCTTCAGAAGATGATTTCGGATATGGTGTATATTATGCTATATCTAATGGTGGAAGGTTATATACAGGTACTGTAACGAATAGTAGTTGGAATGAATCTCAAAAGTATCCTATAATGAAAGAGCTATGGACTGGAACACATAATTTTAAAGACACAAATAAAAAAGAACAAATGACAGATAGTATTGACAACTATAACTATGTAGAGATATATACTCGATACAGAGCATTACAGAACACAAAAGGTACGGATAAAACAGGAACACTTTGCCACAAGTTTTATGTCGATGGTGACGGTATTTATGTATGCTCAGGCTCTTATGTATCGGGAGACCCTGATAGAATAGGTGTAGAATACTACAGAGTAACATTAACTATTTCAGGAGATACTTGGACTATTAAAGATAGTGCAGTAAATAATAATAAAAATCAATACATTAAACGAGTAGTTGGTTTATCTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0e67f4e190be49a6a62ff6049e81c06aff94559e1d33ec151709f92fbf4d1f64
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7845
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Natural phage communities crosslink different species within the genus Staphylococcus Goller,P.C., Elsener,T., Lorge,D., Radulovic,N., Bernardi,V., Naumann,A., Amri,N., Khatchatourova,E., Hernandes Coutinho,F., Loessner,M.J. and Gomez-Sanz,E. 2024 — GenBank