Protein

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Genbank accession
YP_011898537.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,61
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MDNIRIAILSANNTPVAFMDNAHKKSMHYWNDDLHEYLQGTANTYTFTVNAKHPDAQHIKAGNKVAFTYKGKSYYLNIVNTDKTEQTITATAWSLSFELINEDAGEYKAGKAMSFEEYLAVFDAERTLKLGLNEVSDKRITNEWTGTTSVLKRLFSLANVFSAEIEFETVLNRDYSLKEIVLNVYRKHSDTDSGVGEYRNDIVLRYGKGITGIRKTTDAEKLYTCIQPTGKDGLTINGLDKKEYDENGNIEYFTDGAIIRAPQARDRFPSNIVNKADAYILMRKEYDTDSKDKLYSMALSDLKTASEPVVTYEVDGYFDTNIGDTVRMQDQEWTPVLYLQARVSEQVRSLTNPKTAKTVFTNYKELTSEISDSLLQRMQDLINKNKVYTCSISTNNGIIFKNGIGSTTLTAYAYDNGVDVADKLQFRWSKDGHEFYVGKSVTVNATDVDTKAVYSFEAMENGIKRGYYEVTITVVMDGEEGKDGEQGPQGEKGEQGEQGPPGPQGAPGLDGIQGPKGDQGIPGKDGKDGKTQYTHIAYANSADGSKDFSVSDSNREYIGMYVDFTQNDSADPTKYAWSKIKGADGAIGTPGKPGADGKTPYLHIAYANSADGKTGFSTTDGTNKLYIGQYTDYTQADSTDATKYTWTKIKGENGKDGTNSRSYILEASDTAIKKGADGALTPSKITFRSFYRDGDSATRIPYNGRFKIEESTNGTSYSVKYTSSANESAKEYTPTATAKILRCTLYSADGTINALDTQSVVVLTDVDNLEIGGRNLLLNTGFNTFNHWIKGSNTKSLQMVNGWCEVTIGGTWSGFVQEFIPEKNVEYIVSYEAYLVDTVAETAVLETDFGTPDQNQTINKTPAKYSLKLKYPSTSLNGKIDFMLSNNEVGKKWRIRNIKLEKGNKATDWSPAPEDIETLVVTLSNDSQTVATDTNGNGGNFIDCSTKVQVYNGAQDVSKVATYTVTKSSGIAGTWDLSTRTYKVSALSTDNGWVDIKVTYNGNSITRRFTVSKSKQGAQGATGPQGDNGPQGPAGTSGRGIKTITEYYLISSAKTGITTASSGWSTSVPTMTATNKYLWNYEKFTFTDNTTATTTPKIIGIYGDKGATGATGPQGPQGNAGATGPQGPQGATGPKGPQGATGATGPQGATGNGIKSITNYYLATASGSGVSASTSGWTTTVQAITMSKKYLWNYEVVTYTNGSTYQSAPCIIGAYGDKGATGATGATGPSGIIVSSTAPSNPKVGQLWQTASGQPIKRWDGSRWVIHYIAVENLDVQTLSAIVANLGTVTAGLIKSKGGHFYINVDTGEIVSKSSDGTISVFVKKENIDMVRSFTAARYWGSRLNYSGLEFYSGGSSMADDIANGSMVCSIRGDEEMRDFSVTNINGDSIWLIRTIKQLTKSISYDSGTVKGPYTSANSANNIRIELKRRGCMVTCKITMIAQFPGSGEYGPFNEVKIPVGYRPVVDFFAPYSEVVGSNIFGTGRYGIGKDGGIKIYVENAGWTERHAAFTWITDD
Physico‐chemical
properties
protein length:1516 AA
molecular weight: 164558,80090 Da
isoelectric point:5,88638
aromaticity:0,09828
hydropathy:-0,49367

Domains

Domains [InterPro]
DC_0266
STR
1–602
DC_0266 DC_1906 IPR008160
IPR010572
ENZ
138–365
IPR010572 IPR008160 DC_1545 G3DSA:1.20.5.320 DC_1328
G3DSA:1.20.5.320
STR
499–549
G3DSA:1.20.5.320 IPR050149
YP_011898537.1
1 1516
Architecture
STR
STR
STR 1-800 | STR 917-1469 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_011898537.1
1 1516
Domain Start End Length (AA) Confidence
N-terminal 1 782 782 0,9120
Central domain 783 1036 255 0,5638
C-terminal 1037 1516 479 0,2601
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-782
Central
783-1036
C-terminal
1037-1516

Taxonomy

  Name Taxonomy ID Lineage
Phage Atrivirus PS6
[NCBI] 		3426492 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_011898537.1 [NCBI]
Genbank nucleotide accession
NC_104266.1 [NCBI]
CDS location
range 13503 -> 18053
strand +
CDS
ATGGATAACATCAGAATTGCGATTTTAAGCGCAAATAACACGCCAGTAGCGTTTATGGATAATGCACATAAAAAGTCCATGCACTACTGGAATGATGATCTACACGAATACTTACAGGGTACGGCGAATACTTACACTTTTACGGTAAATGCAAAGCATCCAGACGCACAGCATATCAAAGCTGGGAATAAGGTGGCATTTACTTACAAGGGGAAATCATACTACTTAAACATTGTAAATACCGATAAAACGGAACAGACGATTACTGCTACGGCATGGTCACTGTCGTTTGAGCTTATTAACGAGGATGCTGGAGAATACAAAGCTGGAAAAGCAATGAGCTTTGAAGAGTACCTTGCCGTATTTGATGCTGAGAGAACGCTAAAATTGGGGCTCAACGAGGTATCAGACAAGAGAATTACCAACGAGTGGACGGGTACAACGTCCGTATTAAAGAGATTATTCTCCCTGGCTAATGTCTTTTCTGCGGAGATCGAATTTGAGACAGTACTGAACAGAGACTACTCTTTAAAAGAGATTGTCCTAAATGTATATCGGAAACACTCCGATACAGACAGCGGAGTCGGAGAATACCGGAATGACATTGTACTGCGGTACGGGAAAGGAATTACCGGAATTCGAAAAACCACAGATGCCGAGAAGCTTTACACCTGCATCCAGCCGACCGGAAAGGACGGTCTGACAATCAATGGTCTTGACAAGAAAGAATACGATGAAAACGGCAATATCGAGTACTTTACAGACGGTGCGATCATCCGCGCACCGCAGGCAAGGGACCGGTTCCCATCCAACATCGTAAATAAGGCTGATGCTTATATCCTGATGCGTAAAGAGTACGATACAGACAGCAAGGACAAGCTCTATAGCATGGCTCTGTCTGATCTTAAAACAGCATCTGAACCGGTGGTGACTTACGAGGTGGACGGATATTTTGACACCAACATCGGGGATACGGTAAGGATGCAGGATCAGGAGTGGACACCAGTCCTTTATCTACAGGCAAGAGTGTCCGAACAGGTGCGCAGTCTTACCAATCCAAAGACAGCAAAGACGGTATTTACAAACTACAAAGAGCTTACATCCGAAATTTCGGACAGCTTATTACAGAGGATGCAAGACCTTATTAATAAAAATAAGGTTTATACTTGCTCTATCTCAACAAACAACGGCATTATCTTTAAAAATGGCATTGGTAGCACTACTCTGACCGCTTACGCTTACGATAACGGCGTGGATGTGGCAGACAAGCTACAATTCCGATGGAGCAAGGATGGACATGAGTTTTATGTTGGTAAGAGCGTTACGGTAAATGCTACGGACGTGGATACAAAGGCGGTGTACTCGTTTGAGGCTATGGAAAATGGGATAAAACGTGGATATTACGAGGTTACGATTACAGTTGTAATGGATGGAGAGGAAGGAAAAGACGGAGAACAGGGTCCGCAAGGTGAGAAAGGAGAGCAAGGCGAACAGGGACCTCCGGGTCCACAAGGCGCTCCGGGATTGGATGGTATACAGGGTCCAAAAGGGGATCAGGGAATCCCGGGAAAAGATGGGAAGGACGGAAAAACACAGTACACCCACATTGCTTATGCAAACAGCGCAGATGGGTCTAAAGATTTTTCTGTATCCGACAGTAATCGGGAATATATCGGAATGTATGTTGATTTTACGCAAAATGACAGCGCAGACCCGACAAAATATGCATGGAGTAAGATCAAAGGCGCAGACGGGGCGATCGGAACACCAGGAAAGCCGGGAGCCGATGGAAAGACCCCGTATCTACATATCGCCTATGCAAACAGTGCAGATGGCAAGACGGGATTTTCCACCACGGATGGTACAAATAAGCTCTATATCGGGCAGTATACAGATTATACACAGGCAGATAGTACAGATGCTACGAAATATACATGGACAAAGATCAAAGGCGAAAATGGAAAAGACGGAACAAACTCAAGAAGCTACATCCTGGAAGCGTCCGATACCGCTATTAAAAAAGGTGCAGACGGAGCTTTAACACCATCTAAAATAACATTCCGGTCGTTTTATCGAGATGGAGACAGTGCGACAAGGATACCATATAATGGTAGATTTAAAATCGAAGAGTCAACCAACGGAACATCATACTCCGTGAAATACACCTCATCTGCGAACGAAAGTGCAAAGGAGTATACACCGACTGCAACTGCGAAAATACTCCGTTGCACGCTTTACAGCGCAGACGGGACTATAAATGCTTTGGATACGCAGAGTGTTGTTGTGCTTACGGATGTGGATAATTTGGAGATTGGCGGTAGGAATTTACTATTAAACACAGGGTTTAATACTTTTAACCATTGGATTAAAGGTAGTAATACAAAATCTCTCCAGATGGTTAATGGATGGTGTGAAGTTACGATTGGTGGGACATGGTCTGGATTTGTTCAAGAATTTATACCAGAAAAAAATGTTGAATACATAGTGAGTTACGAAGCGTATCTGGTAGACACTGTTGCTGAAACTGCTGTGTTAGAAACAGATTTTGGTACTCCAGATCAAAATCAAACAATTAACAAAACGCCTGCAAAATATTCATTGAAATTAAAATATCCATCTACATCTTTAAATGGAAAAATAGATTTCATGTTATCAAATAATGAAGTGGGTAAAAAATGGAGAATTCGAAATATCAAACTTGAAAAGGGTAATAAAGCCACAGACTGGTCTCCCGCTCCTGAGGACATAGAAACTTTAGTAGTAACATTGTCCAACGATTCCCAAACAGTAGCAACAGACACAAACGGAAACGGTGGAAACTTTATAGATTGCTCTACAAAAGTGCAGGTTTACAACGGCGCACAGGACGTTTCAAAAGTCGCTACTTACACCGTAACAAAATCTTCCGGAATTGCTGGTACATGGGATTTAAGTACACGTACTTACAAGGTATCCGCTCTATCTACGGATAACGGATGGGTTGACATTAAAGTAACATACAACGGAAATTCTATCACAAGACGGTTTACGGTTTCGAAATCGAAACAGGGCGCGCAGGGAGCAACGGGACCTCAAGGTGATAATGGACCACAAGGGCCGGCGGGGACGTCTGGAAGAGGGATAAAAACTATTACAGAATATTATTTGATTTCTTCCGCAAAAACAGGAATTACAACAGCGTCAAGCGGTTGGAGTACATCAGTTCCGACGATGACAGCAACAAATAAATACTTGTGGAACTATGAAAAATTTACGTTTACAGATAATACGACAGCGACCACTACACCAAAAATAATCGGGATATACGGAGACAAAGGAGCAACAGGAGCTACCGGTCCACAAGGACCTCAAGGAAATGCAGGTGCAACAGGTCCCCAGGGGCCACAAGGAGCGACAGGCCCGAAAGGACCGCAAGGGGCAACTGGCGCAACGGGGCCGCAAGGAGCAACTGGAAACGGAATAAAGTCTATCACGAATTATTATCTTGCAACGGCAAGCGGAAGTGGTGTGTCAGCGTCTACATCAGGATGGACTACAACTGTACAAGCAATAACAATGTCAAAAAAATATCTGTGGAATTATGAAGTTGTTACCTATACAAATGGTAGCACGTATCAATCAGCACCATGTATCATCGGAGCATATGGTGATAAGGGAGCGACCGGTGCTACAGGAGCAACAGGACCAAGTGGCATAATTGTATCTTCTACGGCTCCGTCAAATCCTAAAGTTGGCCAGTTATGGCAAACGGCATCCGGTCAGCCGATCAAGCGGTGGGATGGAAGTAGGTGGGTGATCCATTATATCGCAGTCGAGAATCTGGACGTGCAAACGCTCAGTGCGATCGTTGCCAACCTTGGAACTGTAACAGCCGGACTTATTAAGAGTAAGGGTGGACACTTTTACATAAACGTAGACACCGGAGAGATCGTGTCTAAAAGCAGTGACGGTACAATTTCCGTTTTTGTAAAAAAAGAGAATATTGACATGGTAAGATCGTTTACAGCGGCTAGGTACTGGGGGAGTCGATTAAACTACTCTGGATTAGAATTTTATTCCGGCGGCAGTAGCATGGCAGATGATATCGCGAATGGATCTATGGTATGCTCTATTCGCGGAGATGAGGAGATGCGTGACTTTTCGGTGACAAACATAAATGGAGATAGCATATGGCTTATTAGGACAATTAAGCAGCTTACAAAATCTATCTCTTACGATTCCGGTACCGTGAAAGGTCCATATACAAGTGCAAACTCCGCTAATAACATCCGTATAGAACTAAAAAGAAGAGGATGTATGGTAACATGCAAGATCACAATGATTGCACAATTTCCGGGAAGTGGCGAATACGGGCCATTCAACGAGGTGAAAATTCCAGTAGGATATCGCCCGGTTGTGGATTTCTTTGCTCCCTATAGCGAAGTTGTAGGATCTAACATATTTGGAACGGGAAGATACGGCATAGGAAAAGATGGGGGGATCAAGATTTATGTGGAGAATGCCGGATGGACAGAACGTCACGCAGCGTTTACGTGGATTACAGATGATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
bfdecc3eda2cdfa9111ca12b4c4c5733f3c605ece89d4835feda290bec874237
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8035
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Temperate bacteriophages infecting mucin-degrading bacterium Ruminococcus gnavus from the human gut Khokhlova,E.V., Shkoporov,A.N., Draper,L.A., Kingston,A.R., Forde,A., Ross,R.P. and Hill,C. 2023-03-30 — GenBank