Protein

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Genbank accession
XPO96478.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSSGCGDVLSLADLQTAKKHQIFEAEVITGKSGGVAGGADIDYATNQVTGQTQKTLPAVLRDAGFSPVSWDFSTGGTLTVDDRDKVVYDPVSKTWYSYTGTLPVVVPASFNPVGNANWKPQTDPDLRNDLSSTDNATLGDAMVGVRQPFTDAVGRTQHDKNSEVVSVLDFYLGTDPDYTNALNRALTASNGVLVPQGEYSTSLLSHPTCSLFGTGGGVLKQSNDSGNHLIFDKPAGGLLSTLSIVGNKATDFTQGQQVSFAGGQDVTIKGIDFKNAKGTGFSLIAYPSDGGPSGYIVSGIRGDYSGYATNKTAGCVLFESASNTIINDVIARNYPQFGAVELKTDAKCNVVSGVIGQSCQHVVYNGTETTNAPSSNIISNVVANNAKYAAVVAGKGSGNLVTNVVADYSSSEATQAHGVTLQGNYNAADNILMVGCSGTNSLGQTQTATSIRFLDGASNNYASVFPMYSASGVVTLETGTTRNFVEVKHPGPKNSLLSSLSTITGVSSIDGTTTSNVVHAPAIGQYIGSMSGRFEWFTKYIDTSALPFVTADKFRLISDGATSLAIGGGTTSQIKLLTSDGTFRAISLVNGNLRLASDASAYIQIAPTAITPSSANTVAIGSASRALSGGFTQTAFTVTSDERAKTLPLELTDAMLDAWAEVNLVQYKYLDRVAEKGEDAARWHFGVVAQRAIEAFTRHGLDATKYGFLCYDKWEASPEIIDEESGEVLTKATAAGERYGIRYDEVLILEAALQRRKAAQLEKRIIALETLVATLTNS
Physico‐chemical
properties
protein length:778 AA
molecular weight: 81854,15970 Da
isoelectric point:5,13253
aromaticity:0,07841
hydropathy:-0,10501

Domains

Domains [InterPro]
DC_1559
ATT
37–185
DC_1559 cd10144
G3DSA:2.10.10.80
ATT
65–133
G3DSA:2.10.10.80 IPR012334 IPR030392
IPR011050
STR
175–440
IPR011050 IPR030392 Coil
cd10144
CHP
640–750
cd10144
IPR036388
RBD
641–767
IPR036388
XPO96478.1
1 778
Architecture
ATT
STR
RBD
ATT 37-185 | STR 186-640 | RBD 641-772 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XPO96478.1
1 778
Domain Start End Length (AA) Confidence
N-terminal 1 177 177 0,9941
Central domain 178 535 359 0,9840
C-terminal 536 778 242 0,9522
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-177
Central
178-535
C-terminal
536-778

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage EF2-1
[NCBI] 		3385240 Viruses >
Host Escherichia fergusonii
[NCBI] 		564 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPO96478.1 [NCBI]
Genbank nucleotide accession
PQ571290.1 [NCBI]
CDS location
range 32843 -> 35179
strand +
CDS
ATGTCAAGCGGATGCGGTGACGTTTTAAGCCTGGCGGATTTACAAACCGCCAAGAAACACCAGATTTTCGAAGCAGAGGTTATCACCGGTAAATCCGGCGGCGTTGCTGGTGGCGCTGATATTGATTACGCGACCAATCAGGTAACCGGGCAGACGCAGAAGACGCTCCCAGCCGTGTTGCGTGACGCGGGCTTTTCTCCTGTGTCGTGGGATTTCTCCACAGGCGGCACGTTAACTGTTGACGACCGCGACAAAGTTGTCTATGACCCTGTAAGCAAGACGTGGTACTCGTATACCGGGACTCTGCCGGTTGTTGTCCCCGCATCGTTTAACCCGGTTGGTAACGCTAACTGGAAACCGCAGACAGACCCGGATTTGCGCAATGATTTATCCAGCACAGACAATGCGACATTAGGTGATGCCATGGTCGGCGTCCGACAGCCATTTACCGACGCTGTCGGCAGGACGCAACACGATAAAAATAGCGAAGTAGTTTCCGTTCTGGACTTCTATTTAGGTACTGACCCTGATTACACAAACGCCCTTAACCGAGCGCTTACAGCTAGTAACGGGGTGCTTGTACCGCAAGGGGAGTATAGTACGTCGCTACTCTCCCACCCGACATGCTCTCTATTTGGAACAGGGGGTGGGGTTTTAAAACAATCAAACGATTCTGGAAACCACTTAATCTTTGATAAACCTGCAGGAGGGCTACTTAGCACCCTGAGTATTGTAGGAAATAAGGCAACGGACTTCACACAGGGTCAGCAGGTTTCCTTCGCCGGTGGGCAGGACGTTACTATTAAAGGTATTGATTTTAAAAATGCAAAGGGAACTGGATTTAGTTTAATAGCATACCCTAGTGATGGGGGCCCGTCTGGATACATTGTAAGCGGCATACGGGGCGACTACTCCGGGTATGCTACAAATAAAACAGCGGGGTGTGTGCTGTTTGAGTCCGCAAGTAATACTATAATCAACGATGTTATCGCCCGAAACTACCCCCAATTCGGGGCGGTTGAGTTGAAAACAGATGCTAAATGTAATGTTGTTAGTGGCGTCATTGGGCAAAGCTGTCAGCACGTTGTTTATAATGGCACCGAGACGACCAATGCCCCTAGCAGTAATATTATCAGTAATGTTGTTGCTAATAACGCTAAGTATGCCGCTGTGGTCGCCGGCAAGGGTTCAGGTAATCTGGTGACAAATGTTGTAGCTGATTACTCCTCCTCCGAGGCCACGCAAGCACACGGCGTTACATTACAAGGCAACTATAATGCCGCTGATAATATTCTAATGGTTGGGTGCAGCGGAACTAATAGTTTAGGGCAAACGCAAACCGCGACTTCTATTAGGTTTTTAGACGGAGCTAGTAATAACTACGCATCGGTTTTCCCTATGTATAGTGCTTCCGGGGTTGTTACACTAGAGACAGGGACTACCCGTAACTTTGTGGAAGTAAAGCACCCTGGACCCAAGAACAGTCTTCTTAGTTCACTATCTACTATAACCGGGGTCTCTAGCATTGATGGTACTACCACCAGTAACGTGGTACACGCCCCCGCTATAGGACAATACATAGGGTCCATGTCCGGTAGGTTTGAGTGGTTCACTAAGTATATAGATACTTCTGCATTGCCTTTTGTGACAGCTGATAAATTCAGACTAATTTCCGATGGGGCTACATCTTTGGCTATTGGTGGAGGTACGACCTCTCAGATAAAATTACTCACATCTGATGGTACTTTTCGAGCTATTTCTCTGGTTAATGGTAATTTACGCTTAGCCTCTGACGCATCGGCGTATATTCAAATAGCCCCGACGGCTATTACACCATCCAGCGCAAACACCGTCGCTATCGGGTCGGCAAGTCGCGCTTTGTCCGGCGGATTCACTCAAACAGCGTTTACGGTTACGTCTGACGAGAGAGCCAAGACACTACCCCTGGAATTAACTGACGCTATGTTAGACGCTTGGGCTGAGGTTAATTTAGTTCAATATAAGTACCTGGATAGGGTTGCAGAGAAGGGGGAGGATGCAGCTAGGTGGCACTTTGGAGTAGTAGCCCAACGAGCAATTGAGGCGTTTACCCGGCACGGGTTGGACGCGACTAAGTACGGTTTCCTGTGCTACGATAAGTGGGAAGCGTCTCCGGAAATTATTGATGAGGAATCTGGGGAAGTATTAACAAAAGCTACGGCGGCAGGGGAGCGGTATGGTATTCGTTATGATGAGGTATTGATATTAGAGGCTGCGTTACAGCGACGTAAAGCAGCTCAGTTAGAGAAAAGGATTATAGCGCTTGAGACATTAGTGGCTACCCTGACAAACAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ea309046eeb13946851a11ff363c41a36dda694024db62b74c8a545c82564f43
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7916
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50