Protein

View in Explore
Genbank accession
AGA17900.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,87
Protein sequence
MAFPLNPTPGDTTTLDGRYWTYSGDVESWWYWGVDSNTGAHIKIYANSITNATGAPGPQGPPGADGADGVDGVDGLGWTGGSYDPLTGVVTFTSDDGLGFVTGDLRGADGADGVDGVDGAVGPQGPEGPQGLQGDTGPQGPQGLQGEQGLQGPQGLPGADGADGAQGPQGIQGEQGLQGPQGLPGADGADSTVPGPQGPKGDKGDTGDAGPQGPKGDTGDAGPQGLKGDPGNDGADGATGPEGPQGPQGNPGADGADGAQGPKGDKGDTGDPGAQGPQGNPGDQGPQGNPGADGADGAIGPEGPQGPQGPEGPEGPMSTAALTVDINSDIASASRAIIYAPGSNGQASLKYNGSFLINPLNGTLTAPTFIGDLTGDVSVATISSSGSNIGVTPTGNLTMTVGNHIIVGAGNQLRLLKKDGSNRVALNMENITANRTVSFPDKGGTIAMTSDLGSGFTPAFITVTNSTAQSIQDTMQDVVFNSTEVSQGMTLTGGKVRIDTAGTYVIHVIWYGYQTSGNNRMDIQTILQLNGSTIANSRLATYTRDSTYDTGGCGGSTIGTFSVNDLISLQCQKTPNVLGSIQARLSLHRIA
Physico‐chemical
properties
protein length:591 AA
molecular weight: 58723,91910 Da
isoelectric point:4,07441
aromaticity:0,04738
hydropathy:-0,46734

Domains

Domains [InterPro]
DC_0341
STR
7–194
DC_0341 IPR008160 IPR008160
IPR050149
Unmapped
54–341
IPR050149
IPR008160
STR
137–190
IPR008160 DC_0620
G3DSA:1.20.5.320
STR
161–194
G3DSA:1.20.5.320
DC_0620
STR
172–261
DC_0620
AGA17900.1
1 591
Architecture
STR
STR 7-560 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage P60
[NCBI] 		2905923 Uroviricota > Caudoviricetes > Autographivirales > Tiilvirus P60 >
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGA17900.1 [NCBI]
Genbank nucleotide accession
AF338467 [NCBI]
CDS location
range 38503 -> 40278
strand +
CDS
ATGGCATTTCCTCTTAACCCCACTCCAGGGGATACAACAACCCTCGATGGTAGATACTGGACTTATAGCGGAGATGTTGAGTCCTGGTGGTACTGGGGAGTTGACTCAAACACTGGTGCTCACATCAAGATCTATGCAAACAGCATCACAAATGCAACAGGCGCTCCTGGACCACAGGGACCTCCTGGAGCTGACGGTGCAGATGGTGTAGATGGTGTTGATGGCCTAGGCTGGACAGGTGGATCCTATGATCCCCTGACTGGTGTTGTGACCTTCACTTCTGATGATGGCCTCGGCTTCGTTACCGGTGACCTTCGTGGTGCTGATGGTGCCGATGGTGTTGACGGTGTTGACGGTGCTGTTGGCCCCCAAGGCCCAGAAGGCCCTCAAGGTCTCCAAGGTGATACTGGCCCCCAGGGTCCTCAAGGCCTGCAGGGTGAGCAGGGGCTACAAGGCCCTCAGGGACTCCCAGGAGCCGATGGAGCAGACGGAGCCCAGGGTCCACAGGGAATCCAGGGCGAGCAGGGTCTACAGGGCCCACAGGGCCTTCCAGGGGCCGATGGTGCAGACTCCACTGTTCCGGGTCCTCAAGGTCCAAAAGGTGATAAAGGTGACACAGGTGATGCTGGCCCCCAGGGACCTAAAGGTGACACAGGTGATGCCGGTCCTCAGGGGCTAAAAGGTGATCCAGGTAACGACGGTGCTGATGGGGCTACCGGGCCTGAAGGTCCCCAGGGTCCTCAAGGTAACCCAGGTGCTGATGGCGCTGATGGCGCTCAAGGACCAAAGGGTGACAAGGGAGACACTGGCGACCCAGGTGCTCAAGGCCCCCAAGGCAACCCGGGCGATCAAGGTCCCCAAGGTAACCCAGGGGCTGACGGTGCTGATGGGGCCATTGGTCCTGAAGGCCCTCAAGGTCCTCAGGGTCCTGAAGGTCCTGAAGGTCCGATGAGCACTGCCGCTCTGACCGTTGACATCAACTCCGACATCGCCAGTGCTTCCCGTGCGATCATCTATGCTCCAGGCTCTAATGGCCAGGCATCCCTGAAGTACAACGGCTCGTTCCTGATTAACCCCCTGAATGGCACACTAACGGCTCCTACCTTCATTGGTGATCTCACTGGCGACGTTTCTGTGGCCACGATCTCGTCCTCGGGTTCGAACATCGGTGTTACTCCCACAGGCAACCTCACAATGACTGTTGGTAACCACATCATCGTGGGTGCTGGTAATCAGCTCCGCCTCCTGAAAAAGGATGGGTCCAATAGGGTCGCTCTGAACATGGAGAACATCACGGCTAACCGCACGGTGTCTTTCCCTGATAAGGGTGGTACGATTGCGATGACCTCTGATCTGGGTAGTGGGTTTACTCCTGCCTTCATCACTGTCACTAACAGCACTGCTCAGTCCATCCAGGATACAATGCAGGATGTGGTCTTTAATTCCACTGAGGTCTCCCAAGGGATGACGCTGACAGGCGGTAAGGTTCGGATTGATACTGCTGGAACCTATGTGATACATGTTATATGGTACGGATACCAGACCAGTGGTAATAACAGAATGGACATCCAAACCATTCTCCAGTTAAATGGCAGCACGATTGCCAACTCCCGTCTTGCTACTTACACCCGTGACTCAACTTATGACACTGGTGGTTGTGGTGGATCTACCATTGGTACATTCTCAGTGAATGATCTGATCTCACTCCAATGTCAGAAGACCCCTAACGTACTTGGCTCAATTCAAGCTCGTTTGAGTTTACACCGCATAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
41098546a66771dc31158b78dee66c95e342d2672e7b75dc2462254c375808cd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6878
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomics of marine cyanopodoviruses Chen,F. and Huang,S. 2018-08-15 — GenBank