Protein

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Genbank accession
XAL80167.1 [GenBank]
Protein name
straight fiber tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,86
Protein sequence
MISNNAPAKMVLNSVLTGYTLAYIQHSIYSDYDVIGRSFWLKEGSNVTRRDFTGVDTFSVTINNLKPTTTYEVQGAFYDSIIDSELLNAQIGINLSDKQTFKMKSAPRITGARCESEPVDVGVGAPIVYIDTTGEADYCTIELKNNSNANNPWVKYYVGALMPTIMFGGVPIGSYKVRISGQVSLPDGVTIDSSGYYEYPTVFEVRYNFVPPTAPINVVFKAARIADGKERYDLRVQWDWNRGTGANVREFVLSYIDSAEFARTGWTKAQKINVGAAQSATIISFPWKVEHKFKVSSIAWGPDAQSITDSAVQTFILNESTPLDNSFVNETGIEVNYAYIKGKIKDGSTWKQTFLIDAATGAINIGLLDAEGKAPISFDPIKKIVNVDGSVITKTINAANFVMTNLTGQDNPAIYTQGKTWGDTKSGIWMGMDNATAKPKLDIGNATQYIRYDGDTLRISSGVVIGTPNGDIDIETGIQGKQTVFIYILDTSLPAKPTSPAYPPSGWSKTPPNRTSNTQNIYCSTGTLDPVTNQLVSGTSWSDVVQWSGTEGVDGRPGADGKPGADGRPGADGRPGADGQRGPGMYSLAIANLTAWNDSQANSFFTSNFGTGPVKYDVLTEYKSGAPGTAFTRQWNGSAWASPAMVLHGDMIVNGTVTASKIVANNAFLSQIGVNIIYDRAAALSSNPEGSYKMKIDLQNGYIHIR
Physico‐chemical
properties
protein length:706 AA
molecular weight: 76344,72660 Da
isoelectric point:5,52784
aromaticity:0,10057
hydropathy:-0,24306

Domains

Domains [InterPro]
IPR057550
STR
10–97
IPR057550 IPR057551 IPR057552 IPR057549 IPR057549
IPR057551
STR
104–196
IPR057551 DC_1191
XAL80167.1
1 706
Architecture
STR
STR
STR
STR 10-97 | STR 103-197 | STR 211-706
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XAL80167.1
1 706
Domain Start End Length (AA) Confidence
N-terminal 1 409 409 0,8608
Central domain 410 672 264 0,1663
C-terminal 673 706 33 0,9261
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-409
Central
410-672
C-terminal
673-706

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SCF
[NCBI] 		3143147 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XAL80167.1 [NCBI]
Genbank nucleotide accession
PP735124 [NCBI]
CDS location
range 17917 -> 20037
strand +
CDS
ATGATTTCAAATAATGCACCAGCTAAAATGGTCCTAAATAGCGTCTTAACTGGATATACGTTGGCGTATATCCAGCATTCTATCTATTCTGATTATGACGTTATAGGCAGATCTTTTTGGCTTAAAGAGGGTAGCAACGTTACTCGTAGAGATTTTACTGGAGTTGATACCTTCTCTGTAACTATTAATAACCTAAAACCTACAACAACTTATGAAGTTCAGGGTGCATTTTATGATTCTATAATAGACTCTGAACTACTTAATGCTCAGATAGGTATTAATCTATCTGACAAACAAACTTTTAAAATGAAGTCGGCACCTAGAATTACGGGTGCTAGATGTGAATCAGAGCCTGTAGACGTCGGTGTTGGAGCGCCAATAGTTTATATAGATACTACAGGAGAAGCTGATTATTGTACTATAGAATTAAAAAATAATTCTAATGCTAATAATCCGTGGGTTAAATACTATGTTGGTGCGTTGATGCCAACTATTATGTTTGGTGGTGTGCCAATTGGGTCCTATAAAGTAAGAATTTCTGGACAAGTATCCCTACCAGATGGAGTAACTATTGATTCATCTGGGTACTATGAGTATCCTACTGTCTTTGAAGTTAGATATAACTTTGTACCTCCTACAGCCCCTATTAATGTTGTATTTAAAGCTGCACGTATAGCTGATGGTAAAGAACGTTATGATTTACGTGTACAATGGGATTGGAATAGGGGTACAGGTGCTAACGTTCGTGAGTTCGTTCTATCTTATATAGATTCAGCAGAATTTGCTAGAACTGGATGGACTAAGGCACAAAAAATCAACGTAGGGGCTGCTCAGTCTGCAACAATTATATCATTCCCCTGGAAAGTAGAACATAAATTTAAAGTGTCGTCTATTGCCTGGGGACCAGATGCTCAAAGTATTACTGATTCTGCAGTACAGACATTTATACTAAATGAGAGTACACCGTTAGATAATAGTTTTGTTAATGAAACTGGTATAGAGGTAAATTACGCGTATATTAAGGGTAAGATTAAAGATGGATCTACCTGGAAACAAACCTTTCTAATAGACGCTGCCACCGGTGCTATTAATATAGGTCTTCTAGACGCAGAAGGAAAAGCACCAATATCTTTTGATCCTATTAAAAAGATTGTTAATGTTGATGGTAGCGTAATCACTAAAACTATTAATGCCGCTAACTTTGTCATGACTAATTTGACTGGTCAAGATAACCCAGCAATCTATACCCAAGGTAAAACTTGGGGAGATACAAAATCCGGTATTTGGATGGGCATGGATAATGCTACTGCGAAGCCAAAATTGGACATTGGTAACGCTACACAGTACATTCGTTATGATGGTGATACATTAAGAATCTCTAGTGGGGTTGTAATTGGTACACCTAATGGCGATATCGATATAGAGACTGGTATACAAGGTAAGCAAACAGTATTTATTTATATTCTAGATACTTCATTACCTGCTAAACCAACAAGCCCCGCATATCCACCTTCTGGTTGGTCTAAAACTCCACCAAATAGAACATCTAATACTCAGAATATTTACTGCTCTACTGGTACTCTAGACCCTGTTACTAACCAATTAGTATCTGGAACTAGTTGGTCAGATGTAGTTCAATGGAGTGGTACTGAAGGTGTTGATGGTAGACCCGGGGCAGATGGTAAGCCAGGTGCTGATGGTAGACCAGGAGCTGATGGGCGGCCAGGAGCAGACGGACAACGTGGTCCTGGAATGTATTCTCTTGCTATTGCAAATTTAACCGCATGGAATGATTCTCAGGCTAATTCGTTTTTTACATCTAACTTTGGTACTGGTCCTGTTAAATATGATGTATTAACCGAGTATAAAAGTGGGGCACCAGGAACAGCGTTTACTAGGCAGTGGAATGGTTCAGCATGGGCTAGCCCTGCAATGGTTTTACATGGTGATATGATAGTTAATGGTACAGTAACTGCTAGTAAAATTGTTGCTAATAACGCTTTCTTATCACAAATTGGTGTAAATATTATATATGATCGTGCAGCAGCACTATCCTCTAATCCAGAGGGATCTTACAAAATGAAGATAGACCTGCAAAACGGGTATATCCATATAAGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ba96d678b321be45b424ac3501e0eb85645a12b9aca227bc50dfa154a829537c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7891
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of a lytic phage that eliminates Salmonella Enteritidis from contaminated fresh produce Dapuliga,C.C. and Schmidt,S. 2020-12 — GenBank