Protein

View in Explore
Genbank accession
YP_009800372.1 [GenBank]
Protein name
Phage tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,63
Protein sequence
MAGVNGRYDSVILGVSQQTPHDRRSGQMDGQDNFLSDPVRGLARRWGSKQTARQNVSSANLTDPVLTALAGKFMTKAFFCDGREYELIYAKQPTPETGGVFCYDRLNKKFLNVQYDGALANSIKNNGISSLVNIGRLMVMSVNNNKPAYTTQQVKPLKNTARPGVIWIRQGSYSRNYSVVITYTDGSQATVTHKTMGASYEGILDTSDIPWNKDNPGAYTKAVADRTNKYNTAVTQHIAASTEDIQPDTIAKKFRDKIATQLGIGNHIAATGSYVYFSAGANIANVTSTDGGDSTFMRTVVDSLDDIDKLSPWHYNGMVIRISPKKQSEKDSFYVQATTKDGSNFGEVAWKECPGQRFTPNNVFCIAWADGNTLFIGSSPESLNIMTTNKADCPRLEPSVVGDDKTSPVPYFLSGRTINYLGIFQDRLLVSSGAVVFASRPGDYFNWFRATVLNVEDNDPVEMYALGSEDDVIRWDSSFDRNHILHGEKNQYLLPGRSVLSPKNPSIQIMSAVEGTTGSEPQSSGSVVFFSKGATYGGSLHQIQMGASTDSSESYECSQQLDTYIDGRPCQILSVVSPYYVIMRLSNSLNKMYIYTYLDSMQGGERLFDSWSRWTWDSELGPCCGIAYFREELVKFSFRRGVGGVYIVADQMYLHSETSPDPYLDSMVNFGQYQEEIKQWPQALRDKLVVVYGREHSQNLMGTPYNELDKNMPELRLPENANRAWAGFNYDTLCRLTNPFIRDXDGKSIINGRLTLGNLTLSLDNSGGVEVFVETSGRRSRTVSFEGRLLTRITNKVGRVPLVDYGVKLPVYREVRECQVEFRALTWLPLTVSGIEWKGQYFNNLKRV
Physico‐chemical
properties
protein length:848 AA
molecular weight: 94523,12860 Da
isoelectric point:6,81604
aromaticity:0,10390
hydropathy:-0,41039

Domains

Domains [InterPro]
IPR058003
TTP
1–847
IPR058003
DC_0058
STR
1–848
DC_0058
YP_009800372.1
1 848
Architecture
STR
STR 1-848
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009800372.1
1 848
Domain Start End Length (AA) Confidence
N-terminal 1 188 188 0,7584
Central domain 189 397 210 0,2816
C-terminal 398 848 450 0,3837
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-188
Central
189-397
C-terminal
398-848

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage phiR8-01
[NCBI] 		1206556 Uroviricota > Caudoviricetes > Autographivirales > Melnykvirinae > Pienvirus
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009800372.1 [NCBI]
Genbank nucleotide accession
NC_047951.1 [NCBI]
CDS location
range 23865 -> 26411
strand +
CDS
ATGGCAGGTGTAAACGGACGCTATGACTCCGTTATCCTGGGGGTGTCCCAACAGACGCCCCATGACCGCCGAAGTGGTCAGATGGATGGACAGGATAACTTCCTAAGTGACCCGGTACGTGGCCTAGCCCGTCGCTGGGGTAGTAAGCAAACAGCAAGACAGAACGTGTCCTCGGCAAACCTGACGGACCCGGTACTGACTGCACTCGCAGGTAAATTCATGACTAAAGCCTTCTTCTGTGACGGGCGTGAGTATGAGCTTATCTATGCAAAACAGCCCACACCTGAGACGGGAGGCGTGTTCTGTTATGACCGCCTGAACAAGAAGTTTCTCAACGTTCAGTATGACGGTGCGCTGGCTAACAGCATTAAGAACAACGGAATTTCAAGCCTGGTAAACATCGGTCGCCTGATGGTTATGTCGGTCAATAACAACAAGCCTGCATACACCACACAACAGGTCAAGCCATTGAAGAATACAGCACGCCCCGGCGTTATCTGGATTCGACAAGGTTCGTATTCCCGTAACTATTCTGTGGTTATCACATACACAGACGGTAGCCAGGCAACAGTAACGCACAAGACTATGGGCGCATCATACGAGGGTATCCTGGACACCAGTGACATCCCGTGGAACAAAGATAACCCAGGCGCTTACACTAAGGCTGTGGCAGACCGCACGAACAAGTACAACACTGCGGTAACTCAACACATCGCAGCATCGACTGAGGACATCCAGCCGGACACTATCGCTAAGAAGTTCCGTGATAAGATTGCTACCCAATTGGGTATCGGAAACCACATCGCGGCTACTGGCTCGTATGTCTATTTCAGTGCTGGTGCCAACATCGCTAACGTAACCTCTACGGATGGCGGTGACAGTACGTTTATGCGTACAGTGGTTGACAGTCTGGATGACATCGACAAGCTATCGCCGTGGCATTACAACGGAATGGTTATCCGTATCTCACCTAAGAAACAAAGTGAGAAGGACAGCTTCTACGTTCAGGCCACCACTAAGGACGGCAGTAACTTCGGTGAGGTAGCCTGGAAGGAATGCCCAGGGCAGCGGTTTACGCCTAACAACGTATTCTGCATAGCGTGGGCTGACGGTAACACGCTGTTCATTGGCTCAAGTCCTGAGTCGCTAAACATCATGACTACCAACAAGGCTGACTGTCCTCGTTTAGAACCATCCGTGGTTGGTGACGATAAGACAAGCCCGGTCCCGTACTTCCTGAGTGGACGCACAATCAACTACCTGGGTATCTTCCAGGACAGGCTACTGGTTTCCAGTGGTGCAGTTGTGTTCGCTTCCCGGCCTGGTGACTACTTCAACTGGTTCCGTGCTACTGTGCTGAACGTTGAGGATAATGACCCGGTTGAAATGTATGCCCTCGGCAGTGAGGATGACGTGATTCGCTGGGACTCCAGCTTTGACCGTAACCACATCCTGCATGGCGAGAAGAACCAGTACCTGCTTCCTGGTCGCTCTGTGCTCTCACCTAAGAACCCTAGCATTCAGATTATGAGTGCGGTAGAGGGTACGACAGGCTCTGAGCCACAGTCTTCCGGTAGTGTGGTGTTCTTCTCCAAAGGCGCTACATACGGTGGCAGTCTGCATCAGATTCAAATGGGCGCATCTACGGATAGCTCGGAATCGTATGAGTGTAGCCAGCAGCTTGACACGTATATCGACGGCAGGCCATGCCAGATTCTTAGCGTGGTGTCTCCATACTACGTCATCATGCGACTGAGCAACAGCCTTAACAAGATGTACATTTACACCTACCTGGATTCAATGCAGGGCGGTGAGCGGCTGTTCGATAGCTGGTCACGATGGACGTGGGACAGCGAGTTAGGCCCGTGCTGTGGCATTGCGTACTTCCGGGAAGAACTGGTTAAGTTCTCATTCCGGCGCGGTGTCGGTGGTGTCTACATCGTAGCAGACCAGATGTACCTGCATTCAGAAACATCACCAGACCCTTACCTTGACTCAATGGTTAACTTCGGTCAGTACCAGGAAGAGATTAAGCAGTGGCCCCAGGCACTACGTGACAAGCTAGTTGTCGTGTACGGTCGTGAGCACTCGCAGAACCTGATGGGTACGCCGTACAATGAGTTGGATAAGAACATGCCTGAGCTTCGTCTACCTGAGAATGCTAACAGGGCATGGGCTGGTTTCAATTACGATACTCTGTGCAGGCTTACTAACCCGTTCATTCGTGACYGGGACGGTAAGAGCATCATCAACGGACGCCTGACGCTGGGTAACTTGACACTGAGCCTGGATAACTCCGGTGGTGTTGAAGTMTTCGTTGAGACGAGTGGACGCCGTAGCAGGACCGTTAGCTTTGAGGGCAGGCTGTTAACCCGAATCACCAACAAAGTGGGACGTGTCCCGCTGGTCGACTACGGCGTTAAATTGCCCGTGTACCGCGAGGTGCGCGAATGTCAGGTAGAGTTCCGTGCATTAACCTGGTTGCCATTGACGGTTTCCGGGATTGAGTGGAAGGGACAATACTTTAACAACCTCAAGAGGGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a48894ffb6f12e40533d33bae889fe3ab95504808499321f7150ad517c84d737
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8918
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of five bacteriophages specific for Yersinia species Skurnik,M., Nawaz,A., Happonen,L., Butcher,S. and Mattinen,L. 2012 — GenBank