Protein

View in Explore
Genbank accession
QYC51006.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MALNNFTPINENNTMAELTQSHNSIGNELSKPRNIFVILDEVERKVNNAQLRNITTESGLTKAPVGSRILDVKELGVYYYSASDLASKSDKPDMNSQDVVLVNTPTNNSNNVIQQVFPITTNDNAIQQAYRVVTGNTAGKWVYLKGNVDSKTQSISNQDLNTFMAVGHYMTYNCTNTPSGENEGLLKVYRSDIGAIVQEFISTKTNSRYHRTIGTNENLTWVKSLELEDIFKYSLGNTTTDGYFTFGLLIYKADNKTFEQAIRDHIIKTGQPTFTFYVQGGVTGNPHGTMSARGIFVSDTSRLTEGTETLHGVYYTISYTGTLITGAVSADDWRIPKGSDSTTTLWTGVKKFTSKTTEKMNYSSNDFDYFKIFVTIGATNSNSIYRQGFEFGKHSANKFKVSGVNVPSSGTTLEHFMCSISFDGDKFTIDEYNTKTNNKCYITEIVGINRPI
Physico‐chemical
properties
protein length:452 AA
molecular weight: 50281,46710 Da
isoelectric point:6,46813
aromaticity:0,10398
hydropathy:-0,43960

Domains

Domains [InterPro]
DC_1773
STR
11–243
DC_1773 IPR057110
cd19958
STR
151–212
cd19958
DC_0448
STR
194–450
DC_0448
QYC51006.1
1 452
Architecture
STR
STR 11-450 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QYC51006.1
1 452
Domain Start End Length (AA) Confidence
N-terminal 1 329 329 0,5180
Central domain 330 441 113 0,0107
C-terminal 442 452 10 0,9958
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-329
Central
330-441
C-terminal
442-452

Taxonomy

  Name Taxonomy ID Lineage
Phage Mammaliicoccus phage vB_MscM-PMS3
[NCBI] 		2861056 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Mammaliicoccus sciuri
[NCBI] 		1296 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QYC51006.1 [NCBI]
Genbank nucleotide accession
MZ573780.2 [NCBI]
CDS location
range 85306 -> 86664
strand +
CDS
ATGGCTTTAAATAATTTTACACCTATTAATGAAAATAATACTATGGCAGAGTTAACTCAATCACATAATTCTATAGGTAATGAACTTTCTAAACCTAGAAATATCTTTGTTATTTTAGATGAAGTAGAACGAAAAGTTAATAATGCACAACTAAGAAATATAACAACCGAAAGTGGATTGACAAAAGCACCGGTAGGTAGTAGGATTTTAGATGTAAAAGAGTTAGGGGTATATTACTATAGTGCTAGTGACTTAGCTAGTAAAAGTGATAAACCGGATATGAACTCACAAGATGTTGTGTTAGTTAATACACCTACAAACAATAGTAATAATGTTATCCAACAAGTATTCCCTATTACTACAAATGATAATGCTATACAACAAGCCTATAGGGTTGTTACTGGGAATACGGCAGGTAAATGGGTCTATTTAAAAGGTAATGTAGATAGTAAGACACAAAGTATTAGTAATCAAGACTTAAACACGTTTATGGCAGTAGGTCATTACATGACTTATAATTGTACAAATACACCTAGTGGAGAGAATGAAGGATTACTTAAAGTATATCGTTCGGATATAGGGGCTATAGTACAAGAATTTATATCTACAAAAACAAATAGTAGGTATCATAGAACTATAGGTACTAATGAGAACTTAACTTGGGTTAAATCCTTAGAGTTAGAAGATATATTTAAGTATAGTTTAGGTAATACTACAACTGATGGTTATTTTACTTTTGGTTTATTAATATACAAAGCTGATAATAAGACATTTGAGCAGGCTATTAGAGACCATATTATAAAAACAGGACAACCTACATTTACATTTTATGTACAAGGTGGTGTTACCGGTAATCCACACGGTACAATGAGTGCTAGGGGTATATTTGTTAGTGATACTAGTAGATTAACTGAAGGTACCGAAACTCTACATGGTGTATATTATACAATATCTTATACAGGTACTTTGATTACAGGGGCAGTTTCAGCAGATGATTGGCGTATCCCTAAAGGTTCAGATTCAACAACTACCTTATGGACTGGTGTTAAAAAGTTTACAAGCAAAACAACGGAAAAAATGAACTACTCATCTAATGACTTTGATTACTTTAAAATATTTGTTACAATAGGTGCAACAAATAGTAACTCTATCTACAGACAAGGATTTGAATTTGGAAAACATAGTGCTAACAAATTTAAAGTTTCCGGTGTAAACGTACCGTCAAGTGGAACTACTTTAGAACACTTTATGTGCTCAATATCATTTGATGGGGACAAGTTTACGATAGATGAATACAATACTAAAACAAATAATAAGTGCTATATAACGGAAATAGTAGGTATTAATAGACCTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3b8c45541ae88495009885c221eab1b7fe46c94eb4acfa8554d3823825c6cf19
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7528
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Mammalicoccus virus vB_MscM-PMS3 infecting Mammalicoccus sciuri Kwon,H., Park,S.Y. and Kim,J.H. 2023-12-11 — GenBank