Protein

View in Explore
Genbank accession
QEG05491.1 [GenBank]
Protein name
baseplate hub subunit
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MQRPGFPNVSIKLYQDYEAFLENRFVELGATFITMTLRDSLRGVNEGLLQIYDSKALHTKLAGTEIIQISLSTANTEQVFNRIYGIAHSNVTVDSKADNIITFQLKSYHETLNLKFSRATDTNAMNNITSMIDAIYKNVPLWKPTITGVNVFIPKCPWVSTVNDYFEYVRTHGQSVDNESFVYCWEDFDGIKITDHKLLMQGDPIPAIVTEPTLTGQFMDMSEYLMVFNFEWDTKSNAVTKNSFANVTYTTIDFITKQYNKIVVGNGDNIAHFAHGGAYGNLTYKNAYLEGSKLATFGQFDSYASAVCHGNFSLRPAQKLRFFDAKQQIRTDFIVDEVVHEICREQSLTHIHMFSHSEILKDVQFEGKM
Physico‐chemical
properties
protein length:369 AA
molecular weight: 42009,07470 Da
isoelectric point:5,73314
aromaticity:0,12195
hydropathy:-0,21870

Domains

Domains [InterPro]
IPR043504
Unmapped
1–111
IPR043504 IPR043085 IPR015180
SSF69279
STR
1–196
SSF69279 SSF69279
SSF69279
STR
1–195
SSF69279 SSF69279
IPR015181
ATT
2–195
IPR015181 IPR043083
IPR043084
Unmapped
245–364
IPR043084
QEG05491.1
1 369
Architecture
ATT
ATT 1-368 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QEG05491.1
1 369
Domain Start End Length (AA) Confidence
N-terminal 1 124 124 0,5903
Central domain 125 323 200 0,0561
C-terminal 324 369 45 0,8684
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-124
Central
125-323
C-terminal
324-369

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage JK32
[NCBI] 		2591059 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QEG05491.1 [NCBI]
Genbank nucleotide accession
MK962753 [NCBI]
CDS location
range 120090 -> 121199
strand +
CDS
ATGCAAAGACCCGGATTTCCTAACGTCTCTATAAAGCTATATCAGGACTATGAAGCATTTTTGGAAAATAGATTTGTTGAATTGGGAGCAACCTTCATTACAATGACATTACGAGATTCTCTTCGTGGTGTCAATGAAGGTCTACTACAGATCTATGATTCTAAGGCGCTTCATACGAAATTAGCAGGAACAGAGATTATACAAATTTCATTATCAACGGCTAATACTGAACAAGTATTCAACCGGATATATGGTATCGCGCATAGTAATGTGACCGTTGACTCTAAGGCCGATAATATAATAACCTTCCAGTTAAAGAGCTACCATGAAACGCTGAATCTAAAGTTTTCTCGCGCTACCGACACTAACGCGATGAATAACATCACCAGTATGATAGACGCGATCTATAAGAATGTTCCCTTGTGGAAACCTACCATTACAGGAGTAAACGTATTCATTCCTAAGTGTCCGTGGGTTAGTACCGTCAATGACTATTTTGAATATGTGAGAACACATGGTCAGAGTGTAGACAACGAATCGTTCGTTTACTGTTGGGAAGACTTTGACGGGATCAAGATCACCGATCATAAACTACTAATGCAGGGTGATCCAATTCCTGCTATCGTCACCGAGCCTACCCTAACAGGACAATTCATGGATATGAGCGAATATTTGATGGTGTTTAACTTTGAGTGGGATACTAAGAGTAATGCGGTAACAAAAAACTCATTCGCTAATGTCACTTACACAACAATTGATTTCATCACGAAGCAGTATAACAAGATTGTAGTGGGTAATGGTGATAACATAGCTCATTTTGCACATGGTGGTGCCTATGGTAATTTGACATATAAAAACGCGTATCTTGAAGGTTCTAAACTGGCAACTTTTGGACAATTTGATTCCTATGCCAGCGCGGTGTGTCATGGTAATTTCTCTCTACGTCCGGCACAAAAGCTAAGATTCTTTGATGCTAAACAGCAAATTCGCACCGACTTTATTGTCGATGAAGTTGTTCATGAAATTTGTCGAGAACAATCATTAACACATATTCACATGTTTAGTCATAGTGAGATTTTGAAAGATGTACAATTTGAAGGTAAAATGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
95fdbf5f052fd9d9a454016dc0f17fc6ac1d402212da34adf23aabfa6092b591
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7610
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A quest of great importance - developing a broad spectrum Shigella ssp. and Escherichia coli phage collection Kaczorowska,J., Casey,E., Neve,H., Noben,J.-P., Lugli,G.A., Ventura,M., van Sinderen,D. and Mahony,J. 2019-09-26 — GenBank