Protein

View in Explore
Genbank accession
AXH50965.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,81
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MPTDETIYLNGTPIKGADGSTNFTGVRWEFRPGTQTQDPITAFPAVESETAVSTECKANVPVTRALSNLQLTACRVRLGFPRLAKVEDNGDTNGVKVQYKIEVSTDGGAWQLMVDGVVEGKTTTLYQRQHRINLPPATRSGWQVRVTRTTPDSTSQNYVDKFNFEVLTEVIDVKLRYPGLALLYLEFDAEQFPNGIPRISCKIKGQKCWIPSNYDPVSRTYSGVWNGTLVRGWTDNPAWHAFEALQSRAWGLGRRIPAAIIDKSKWELYRIAQFADQPVDNATGNGGTEPRFLSNVYIQAQNNAFNVLRDLVATFYGSTCWTGDHLMFNADMPRDPVRAINNASVINGRFEYSFGDQKQRHSTAVVQYDDPTNHYNTVPQPVQVSELVARYGVNPVEITAIGCTRASEAQRRGMYALYTNMDDMVCNFNVGRDGLVYKAGDVVKIADAFVSGSKEVGGRLVSAVVDGGSVLVTLDRKPRGDTTNNVVIYINSTDGTMRPYYFSAIGDNGRVRLRKHPNGPDVNVGNFAEGATWVVDLPSLKTQLFQVLGVAYNDDGTYSISTVKYNASKQNAIDTGARLDQLPVTEIPPGWMGIPANVAITAVDFVVQGQRTQTMRVQWNAVTGAERYAVQWRKDSGDWINAGETSTLGVDVVGIYSGTYTARVRAINAFGVSSPWGVSAPVSLTGRTGAPLAPTTLITSPIIGGVHLSWVFAPDTAPDTAYTELQFRPRGSAAENPLFNVVYPSNAFDHLGLAPAVYFEYRARTLDKLGNASPWTGWVVGNSSENIGGYIEGITDDFLNSETGQALVDKIDISGNAILENALANHADIQQRLVVDGQNRAQILEVRTTVSDQQRTMASLEQQVSAQRKDIDDVGAAVNTKMTAVVDAQGNATAMYAIRSGVTINGTYYGAGMAIGVENNAGVVKAQIGFQADRFIILNGSGRSSPFVIDGGNTYISSAMIQDGTITNTKIGNFIQSTNYHWDDDPNKRTGWAINKNGDAVFASAQVSGGIYARWGVMDNVTINDTCVINGTLSANNIRGDVFASRGNGWWLQKINTGPGAYQRWDICSVELYPDFQRKLAFRGGFKAWAQWGSGTGGWAKLWCGGTLLTEVGYPPNLDASDMEFTLPAGTGAQPIYVEIRSGGNDYSDFYLQIGEWTLSNNSGGQPTGQSRPVIGGGFTLEVSKLNNNVISPLPFNRWPQGL
Physico‐chemical
properties
protein length:1203 AA
molecular weight: 131010,98870 Da
isoelectric point:5,64703
aromaticity:0,09726
hydropathy:-0,27689

Domains

Domains [InterPro]
DC_0014
STR
3–1104
DC_0014
IPR053171
Unmapped
6–868
IPR053171 IPR015406
IPR055385
ATT
46–172
IPR055385 IPR032876 IPR003961 IPR003961 Coil
IPR013783
STR
594–679
IPR013783
IPR003961
STR
595–685
IPR003961
IPR036116
STR
604–679
IPR036116
AXH50965.1
1 1203
Architecture
STR
ATT
STR
ATT
STR
STR 3-45 | ATT 46-172 | STR 173-300 | ATT 301-452 | STR 453-1104 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AXH50965.1
1 1203
Domain Start End Length (AA) Confidence
N-terminal 1 1146 1146 0,7825
Central domain 1147 1192 47 0,4240
C-terminal 1193 1203 10 0,2899
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-1146
Central
1147-1192
C-terminal
1193-1203

Taxonomy

  Name Taxonomy ID Lineage
Phage Serratia phage Scapp
[NCBI] 		2282409 Uroviricota > Caudoviricetes > Scappvirus >
Host Serratia marcescens
[NCBI] 		615 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AXH50965.1 [NCBI]
Genbank nucleotide accession
MH553517.1 [NCBI]
CDS location
range 22190 -> 25801
strand +
CDS
GTGCCGACCGACGAAACAATCTACCTGAACGGGACACCGATTAAGGGTGCCGACGGTTCGACCAACTTCACCGGCGTGCGCTGGGAATTCCGCCCGGGCACACAAACGCAAGACCCGATCACCGCGTTTCCGGCCGTCGAGTCTGAAACCGCAGTAAGCACCGAGTGTAAAGCGAACGTCCCTGTCACGCGAGCGTTGTCTAATTTGCAGTTGACCGCGTGCCGCGTTCGTCTCGGTTTCCCGCGACTGGCGAAAGTTGAGGACAACGGCGACACGAACGGCGTGAAGGTGCAGTATAAAATCGAAGTGTCTACCGACGGCGGCGCATGGCAGCTTATGGTCGACGGCGTTGTCGAAGGTAAAACGACGACCTTGTACCAGCGCCAACACCGCATTAATTTACCCCCGGCAACGCGCTCGGGTTGGCAAGTTCGCGTCACGCGCACAACGCCCGATTCTACATCGCAGAACTACGTCGACAAATTCAATTTTGAAGTGTTGACCGAAGTCATCGACGTTAAACTGCGATACCCGGGCCTCGCGTTGCTCTATCTCGAATTCGATGCCGAGCAGTTCCCGAACGGTATCCCTCGCATCTCGTGCAAAATTAAAGGCCAAAAATGCTGGATTCCGAGCAACTATGATCCGGTGTCGCGCACGTACTCCGGCGTGTGGAACGGTACGCTAGTGCGTGGCTGGACAGATAACCCCGCGTGGCACGCGTTCGAGGCGTTGCAGTCGCGCGCATGGGGCTTGGGACGTCGCATCCCTGCGGCCATCATTGATAAATCAAAATGGGAACTGTACCGGATTGCACAGTTCGCCGACCAGCCCGTCGACAACGCCACCGGCAACGGTGGCACCGAACCGCGCTTCTTATCTAACGTCTATATTCAGGCACAGAACAACGCATTCAACGTGTTGCGCGACCTCGTGGCGACGTTCTACGGTTCGACGTGTTGGACTGGTGATCACTTGATGTTTAACGCTGACATGCCGCGCGACCCGGTGCGTGCAATCAACAACGCCAGCGTGATTAACGGCCGGTTTGAATATTCGTTCGGCGACCAGAAACAACGGCACAGCACCGCCGTGGTTCAGTACGACGACCCGACCAACCATTACAACACTGTACCGCAACCGGTGCAGGTGTCCGAGCTGGTCGCGCGCTACGGTGTGAACCCGGTGGAGATTACCGCCATCGGCTGCACGCGCGCCAGCGAAGCGCAACGCCGGGGCATGTACGCGCTATACACCAACATGGATGACATGGTGTGTAACTTCAACGTCGGCCGCGACGGTCTGGTGTACAAAGCCGGTGATGTGGTCAAGATTGCCGATGCGTTCGTGTCCGGGTCGAAAGAGGTCGGCGGCCGTCTCGTCTCGGCAGTTGTCGACGGCGGTTCCGTGCTCGTCACGCTCGACCGCAAACCGCGCGGCGACACCACAAACAACGTCGTCATTTATATTAACTCAACTGACGGGACGATGCGGCCGTATTATTTCAGCGCCATCGGCGACAACGGCCGCGTGCGTCTGCGCAAACACCCCAACGGCCCGGACGTCAACGTGGGTAACTTTGCCGAGGGTGCGACATGGGTCGTCGATTTGCCATCGCTCAAAACGCAGCTGTTCCAAGTGCTGGGCGTCGCATACAATGACGACGGTACTTACTCGATCTCGACGGTCAAATACAACGCATCGAAACAGAACGCTATCGACACCGGCGCGCGTCTCGATCAACTACCAGTAACCGAAATCCCGCCGGGCTGGATGGGCATTCCTGCGAATGTCGCCATCACAGCCGTTGATTTCGTCGTGCAGGGCCAGCGCACGCAAACCATGCGCGTGCAGTGGAACGCGGTTACCGGTGCAGAGCGTTACGCCGTCCAGTGGCGCAAAGACTCCGGCGACTGGATCAACGCGGGCGAGACTTCGACCCTTGGTGTCGACGTCGTCGGCATCTACTCCGGCACATACACCGCCCGCGTGCGTGCGATTAACGCATTCGGCGTGTCGTCTCCGTGGGGCGTGTCCGCACCGGTGTCACTTACCGGCCGCACCGGCGCGCCACTGGCCCCTACTACGCTTATCACCTCGCCAATCATCGGCGGCGTGCATTTGTCTTGGGTATTCGCGCCGGACACCGCCCCCGATACCGCGTACACTGAATTGCAGTTCCGCCCACGTGGCAGCGCCGCAGAAAACCCGTTGTTCAATGTAGTATACCCGAGCAACGCTTTTGACCACCTCGGATTAGCACCGGCGGTGTACTTCGAGTACCGCGCACGCACGCTCGACAAACTCGGCAACGCGTCGCCGTGGACGGGGTGGGTTGTCGGCAACTCGTCGGAGAACATTGGCGGTTATATCGAGGGCATCACTGATGATTTCCTCAACTCGGAAACCGGGCAGGCGCTGGTCGACAAAATCGACATCAGCGGCAACGCCATTTTAGAGAATGCTCTCGCTAACCATGCCGATATTCAACAGCGTTTAGTCGTCGACGGCCAAAACCGCGCGCAGATTTTGGAGGTGCGCACGACGGTCAGCGACCAACAACGAACTATGGCATCGCTCGAACAACAGGTGAGTGCACAGCGCAAGGACATCGACGACGTGGGTGCAGCCGTCAACACCAAAATGACGGCGGTTGTCGACGCGCAAGGTAACGCGACGGCGATGTACGCCATTCGCTCGGGCGTCACCATCAATGGCACATACTACGGCGCAGGTATGGCGATCGGCGTAGAGAATAACGCCGGTGTAGTTAAAGCGCAAATCGGTTTTCAGGCGGACAGGTTCATCATTCTTAACGGTAGTGGCCGGTCATCCCCGTTTGTTATCGACGGCGGAAACACGTACATCTCGTCGGCCATGATTCAAGATGGCACGATCACGAACACGAAGATCGGGAACTTCATTCAATCGACTAACTATCATTGGGATGACGACCCGAACAAGCGAACCGGCTGGGCCATCAACAAAAACGGCGACGCCGTCTTCGCAAGTGCGCAAGTGTCCGGCGGCATCTATGCGCGTTGGGGTGTGATGGATAACGTAACCATCAACGACACGTGCGTGATTAACGGCACACTATCCGCAAACAACATCCGGGGCGACGTCTTCGCATCTCGCGGTAATGGTTGGTGGTTGCAGAAAATCAACACCGGCCCGGGCGCATATCAACGTTGGGATATTTGTTCCGTTGAGTTATACCCGGACTTCCAACGCAAACTAGCTTTTCGCGGTGGCTTTAAGGCGTGGGCGCAATGGGGTAGTGGTACTGGCGGTTGGGCGAAGTTGTGGTGCGGGGGGACACTACTCACGGAAGTCGGGTATCCGCCAAACCTCGACGCCTCCGATATGGAGTTTACCTTACCCGCAGGTACAGGGGCACAGCCGATCTATGTTGAAATCCGCTCGGGGGGTAATGACTACTCCGATTTTTATTTGCAAATTGGTGAATGGACGTTGTCGAACAACTCAGGCGGTCAGCCGACAGGCCAATCGCGGCCAGTTATCGGCGGGGGCTTTACTCTTGAGGTTTCGAAGTTGAATAATAACGTCATCTCACCGCTACCGTTCAACCGCTGGCCGCAGGGTCTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
37e17ed410d90a53d442d1dca7ad913e5a31cb57874c8dc167f0a7483ed733d6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7658
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Serratia marcescens Siphophage Scapp Koehler,B.T., Hopson,H., Kongari,R., Bonasera,R., Hernandez-Morales,A.C. and Liu,M. 2019 31072886 GenBank