Protein

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Genbank accession
YP_008126345.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSTVKANNLQGGGGVNRNDKAAVQLSGSAALNVTGDFEMDNSANVVVPIGSEDQRPASPSAGQVRVNNTAGSGTLEGYNGTEWISLTAPPAQPVAGSSAENPASSCYDMLTNDNITQNGFYWIDSSGTATLTWCFMEAPWGEPDYSLLTPYGDMSQEYNTTYGWFHQDDRDVGNMTGASWRTNPGIEYFVYFCDGCDASKQRYNYPAPSGHVIHWYGGRSHCGGDQTFGYPGMSNSCANNISNYNCNNVFRFAGVTTTNVGFEQHNDGCGDPNEATLVVVSKVQGTSRPAPSINTWKTYFRDCNWRYGGTNSRNG
Physico‐chemical
properties
protein length:315 AA
molecular weight: 34033,55960 Da
isoelectric point:4,70498
aromaticity:0,11429
hydropathy:-0,60254

Domains

Domains [InterPro]
DC_0326
STR
1–298
DC_0326
G3DSA:3.30.750.130
Unmapped
95–133
G3DSA:3.30.750.130
YP_008126345.1
1 315
Architecture
STR
STR 1-298 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008126345.1
1 315
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0307
Central domain 11 209 200 0,0338
C-terminal 210 315 105 0,9931
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-315

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-IOM18
[NCBI] 		754039 Uroviricota > Caudoviricetes > Pantevenvirales > Tefnutvirus > Tefnutvirus siom18
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008126345.1 [NCBI]
Genbank nucleotide accession
NC_021536 [NCBI]
CDS location
range 19556 -> 20503
strand +
CDS
ATGAGTACAGTAAAAGCAAATAATTTACAAGGCGGCGGTGGAGTCAACCGCAACGATAAGGCAGCAGTTCAGTTATCTGGTAGTGCTGCTCTCAATGTCACTGGTGACTTTGAGATGGATAATAGTGCAAACGTTGTTGTTCCTATTGGTAGCGAAGATCAACGTCCTGCATCTCCTTCTGCTGGACAAGTTCGAGTTAATAATACAGCAGGAAGTGGTACATTAGAAGGATATAATGGAACTGAATGGATCAGTTTGACTGCACCTCCTGCTCAACCTGTTGCTGGTTCTAGTGCAGAGAATCCAGCATCATCTTGCTATGATATGTTGACCAATGATAACATTACTCAGAATGGTTTTTATTGGATCGATTCTTCTGGCACAGCTACACTAACTTGGTGTTTCATGGAAGCGCCTTGGGGTGAACCTGACTATAGTTTGTTGACACCATATGGTGATATGTCACAAGAGTATAATACAACTTATGGATGGTTCCACCAAGATGATAGAGATGTTGGTAATATGACTGGTGCATCATGGAGAACTAATCCTGGTATTGAATACTTTGTATATTTCTGTGATGGTTGTGACGCATCAAAGCAAAGATATAACTATCCTGCGCCATCTGGACACGTTATTCACTGGTATGGTGGAAGAAGTCACTGTGGCGGAGACCAAACATTTGGTTATCCTGGAATGTCTAACTCTTGCGCTAATAACATCAGTAACTATAACTGTAACAATGTGTTTAGATTTGCTGGAGTTACAACAACTAACGTAGGATTTGAACAACACAATGATGGTTGTGGTGACCCCAACGAAGCAACATTGGTTGTTGTTTCTAAAGTTCAGGGAACAAGTAGACCTGCTCCTTCAATCAATACTTGGAAAACATACTTTAGAGATTGTAATTGGAGATACGGCGGAACTAATAGTCGAAACGGTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
22df0ccc085ea335a6d643e2c29ac8e34613b0db173414643dcf1fecd898a52c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4884
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-IOM18 Henn,M.R., Clokie,M., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank