Protein

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Genbank accession
YP_012319348.1 [GenBank]
Protein name
baseplate upper protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MKNYVEKIGMCGVNPCSPMSIYQWDGLTWQELINNVFKGVNDCVSVVNNYTDLVSNTIEWIKTDGLKIYVENKINGLIEDGTISEIINGEIFSQINDDISNIKENVNSNKEFTKEQIKQVENKIIDLGKKIDDKILKLSDELKNNLEEHKEAINIKIEDLGTEFNNGLSEIKKALAIQKGVLVYLNEYSEIAKAGTDEEDWSLAFDYVFKNVVNETVASIIWNGRLKIKSTIHLPKHVNISGIGLPWSGLIPLNNFKGDYVIEDNNEPTHNSIKNIYFDFAENKTVKGLKVLNPYDYNEYKFLVADGIGDTFISIGGSEISQSARIEDCVAYRENRGLGAIMELRNCQEFYVVNNKLLFKTQSNKECLWCDGVTNTTFIHNSFAFTNEVAVKMLANHYPKRLNGNVFTDNLFEGIGAGGCITILGSNNPDLEGSYNSIHDNSYFSSTAIINLGSIANTFISDPVKINHLGGDRRTYLFNRYHETSKTPYGSVEEWCDGAYKMTKSWFKIIPTQEGEPSYLYMTDKAGKERMITISADGQLEIV
Physico‐chemical
properties
protein length:543 AA
molecular weight: 61213,39010 Da
isoelectric point:5,03022
aromaticity:0,09945
hydropathy:-0,34438

Domains

Domains [InterPro]
DC_1947
ATT
1–241
DC_1947
G3DSA:1.20.120.20
STR
63–192
G3DSA:1.20.120.20 IPR011050
Coil
Unmapped
103–130
Coil Coil
YP_012319348.1
1 543
Architecture
ATT
STR
ATT 1-241 | STR 242-464 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_012319348.1
1 543
Domain Start End Length (AA) Confidence
N-terminal 1 200 200 0,9909
Central domain 201 474 275 0,9863
C-terminal 475 543 68 0,8630
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-200
Central
201-474
C-terminal
475-543

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage DCp1
[NCBI] 		2981543 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Clostridium perfringens
[NCBI] 		1502 cellular organisms > Bacteria > Bacillati > Bacillota > Clostridia > Eubacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_012319348.1 [NCBI]
Genbank nucleotide accession
NC_108347 [NCBI]
CDS location
range 2215 -> 3846
strand +
CDS
TTGAAAAATTATGTTGAAAAAATAGGGATGTGTGGAGTAAATCCATGCTCCCCTATGTCAATTTATCAATGGGATGGGTTGACATGGCAAGAATTAATTAATAATGTTTTTAAAGGTGTAAATGATTGTGTATCAGTTGTTAATAATTATACTGATTTAGTTTCAAATACCATTGAATGGATAAAAACAGATGGTTTAAAAATATATGTTGAAAATAAAATAAATGGATTAATAGAAGATGGTACAATTAGTGAAATAATTAACGGGGAAATTTTTTCTCAAATAAATGATGATATTTCCAATATAAAAGAAAATGTTAACAGTAATAAAGAGTTTACAAAAGAACAAATAAAACAAGTTGAAAATAAAATTATAGATTTAGGTAAAAAAATTGATGATAAAATTTTAAAATTAAGTGATGAATTAAAAAATAATTTAGAGGAACATAAAGAAGCAATTAACATTAAAATTGAAGATTTAGGGACAGAATTTAATAATGGATTATCTGAAATTAAAAAAGCCTTAGCAATTCAAAAAGGTGTTTTAGTTTATTTAAACGAATATTCTGAAATAGCAAAAGCTGGGACAGATGAAGAAGATTGGTCACTTGCCTTTGATTATGTTTTTAAAAACGTTGTTAATGAAACAGTAGCGTCAATTATATGGAATGGGAGATTAAAAATTAAATCAACAATTCATTTACCTAAACACGTAAATATTAGCGGTATAGGTTTACCGTGGAGTGGTTTAATTCCTCTAAATAATTTTAAAGGGGATTATGTTATTGAGGATAATAATGAACCTACTCACAATTCAATTAAAAATATTTACTTTGATTTTGCTGAAAATAAAACTGTCAAGGGTTTAAAAGTTTTAAATCCTTACGATTATAATGAATATAAATTTTTAGTTGCTGATGGTATTGGAGATACTTTTATTAGTATTGGAGGTTCAGAAATATCTCAATCTGCCCGAATAGAGGATTGTGTTGCTTATAGAGAAAATAGGGGTTTAGGGGCTATAATGGAACTTAGAAATTGTCAGGAATTTTATGTAGTGAATAACAAGTTATTATTTAAAACTCAATCAAATAAAGAATGTTTATGGTGTGATGGTGTTACAAATACAACATTTATACACAATAGTTTTGCTTTTACTAATGAAGTAGCTGTAAAAATGTTAGCTAATCATTATCCTAAAAGACTTAACGGTAATGTATTTACAGATAATTTATTTGAAGGAATAGGAGCGGGTGGTTGTATAACAATATTAGGTTCTAATAATCCTGATTTAGAGGGAAGTTATAACAGTATTCACGATAACTCTTATTTTAGTTCTACAGCTATAATTAATTTAGGTTCAATAGCAAATACCTTTATATCTGACCCAGTAAAAATTAATCATTTAGGAGGTGATAGAAGAACTTATTTATTTAATAGGTATCATGAAACATCAAAAACTCCTTATGGCTCAGTAGAAGAATGGTGTGATGGGGCTTATAAAATGACTAAATCATGGTTTAAAATAATTCCTACTCAAGAAGGAGAACCATCATATTTATATATGACAGATAAAGCTGGTAAAGAAAGGATGATTACAATATCAGCAGATGGACAATTAGAAATTGTATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
66a45549f839f30d48b94efac3a933cac8b824035fb291f591e9126400870105
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7297
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence analysis of a novel Clostridium perfringens phage DCp1 Tang,Z. 2023-02-20 — GenBank