Protein

View in Explore
Genbank accession
YP_009824051.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 0,99
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MATQPTQNAVPSESPRDLKFNAGKIDEYVTSMGWTYTDRFGFKHYTAEGINYLAQQAMNDFGYITLNGVSFTTGATVSTPNEVLLNTADSQYYKWTGSFASGGKVVPANSTPANSGGIGPGLWLAVGDSSVKAYVDSFISKIASTQEGNGDALIGVKSILTDGTPRTQHDKNADLVTSADVGITSINDATAKIQNLNNSGVTSFLVTDTLNVTQDIPGRVHLSLKEVSQPGSGAIPVRNLGRLNFLPKINKIYNVSSGYDYDYRADSIIKNGSFFVWHGTTIGSTNVGMATSLAASTNAMICAFWRMETTAGATVNSISKITSPAGGLKFNAVYDGSGSFVYIRQNAYGVQAYGQKTFTACIDLEVDQACSMDCYARMRINAINTDEGRPLIVDSENINIPAGRGRYAITFTCPDVDSFRGQETSVNSMEFAFRIFGLSQTIAVKIRGINITPGKDIPHPQKSDIAKDVADADTMYRIGLFRTVGWTSSDATAQKGLTVDLGGQRYTAGTVTLYDMAGAINRVSTYNATGSRTDAVSPTAISVDSLALGFFTVLLNNSSAAGLGGWYIYNAYP
Physico‐chemical
properties
protein length:573 AA
molecular weight: 61193,70990 Da
isoelectric point:5,81710
aromaticity:0,09599
hydropathy:-0,13386

Domains

Domains [InterPro]
DC_1559
ATT
1–209
DC_1559
IPR040775
RBD
57–128
IPR040775
G3DSA:2.10.10.80
ATT
62–137
G3DSA:2.10.10.80
YP_009824051.1
1 573
Architecture
ATT
ATT 1-209 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009824051.1
1 573
Domain Start End Length (AA) Confidence
N-terminal 1 216 216 0,9304
Central domain 217 415 200 0,1089
C-terminal 416 573 157 0,9949
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-216
Central
217-415
C-terminal
416-573

Taxonomy

  Name Taxonomy ID Lineage
Phage Erwinia phage vB_EhrS_59
[NCBI] 		2283025 Uroviricota > Caudoviricetes > Feofaniavirus >
Host Erwinia horticola
[NCBI] 		2290876 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009824051.1 [NCBI]
Genbank nucleotide accession
NC_048198 [NCBI]
CDS location
range 17982 -> 19703
strand +
CDS
ATGGCTACTCAACCAACACAGAATGCAGTTCCTTCTGAGTCTCCCCGCGATCTTAAATTCAATGCAGGGAAGATTGATGAATATGTAACTTCGATGGGGTGGACTTACACTGACAGATTTGGATTCAAGCACTATACGGCAGAGGGTATAAATTATCTCGCCCAACAGGCTATGAATGACTTTGGATACATCACCCTTAATGGGGTAAGTTTCACTACGGGAGCAACAGTAAGCACACCAAATGAAGTTCTTTTGAACACTGCCGACTCTCAATACTATAAATGGACCGGTTCGTTTGCGTCTGGAGGTAAAGTGGTTCCGGCTAACTCCACGCCAGCAAATAGCGGTGGGATTGGTCCGGGCCTATGGTTGGCTGTAGGGGACTCTTCAGTAAAAGCATATGTTGATTCATTTATATCAAAAATTGCCAGTACTCAAGAAGGTAATGGTGATGCTTTGATTGGAGTTAAAAGCATACTGACTGATGGCACCCCAAGAACTCAACATGATAAAAATGCCGATCTCGTTACTTCAGCTGATGTTGGCATAACATCAATCAATGATGCTACTGCAAAAATACAGAATCTAAATAATTCTGGTGTAACTTCATTTTTAGTTACTGATACATTAAATGTCACTCAGGATATTCCCGGAAGAGTGCATTTATCCTTAAAGGAAGTATCTCAACCAGGATCTGGTGCCATACCTGTCAGAAATCTCGGCAGATTGAATTTCCTCCCAAAAATAAACAAAATCTACAATGTTAGTTCAGGATATGACTATGACTATCGCGCGGATAGCATTATAAAGAACGGGTCATTTTTCGTATGGCATGGAACAACCATTGGTTCAACTAACGTTGGGATGGCGACAAGTCTGGCTGCCTCTACTAACGCCATGATTTGTGCGTTCTGGAGAATGGAAACCACAGCTGGCGCCACAGTTAACAGCATAAGCAAAATAACGTCTCCGGCGGGAGGGCTAAAATTCAATGCCGTATATGATGGATCCGGTAGCTTCGTTTACATCAGGCAGAACGCCTATGGAGTTCAGGCTTATGGGCAAAAAACATTTACGGCATGTATAGACTTAGAAGTTGATCAGGCTTGCAGTATGGATTGCTATGCCAGGATGAGAATTAATGCGATTAACACTGATGAAGGCAGGCCGCTAATCGTTGATTCAGAGAACATAAATATACCAGCAGGGCGCGGGCGATATGCAATTACATTCACATGCCCAGATGTAGATAGCTTTCGTGGCCAAGAGACATCTGTCAATAGTATGGAATTTGCGTTCAGAATCTTCGGCCTTTCACAGACTATCGCAGTTAAAATTAGAGGAATAAACATCACTCCTGGAAAGGATATACCTCACCCTCAAAAGTCTGATATTGCTAAGGATGTTGCAGATGCAGATACAATGTATCGCATTGGACTATTCCGAACTGTAGGCTGGACATCATCTGATGCAACAGCGCAAAAAGGACTCACAGTAGACTTGGGTGGGCAAAGGTATACCGCAGGAACAGTTACCTTGTATGATATGGCTGGAGCAATTAACCGGGTATCAACATACAATGCAACTGGATCGCGTACTGACGCAGTTTCTCCTACAGCCATCAGCGTAGATAGCTTGGCGCTGGGTTTTTTTACTGTCTTGTTAAACAACTCCAGCGCAGCAGGATTGGGTGGGTGGTATATTTACAACGCTTACCCTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
d2dd84f1ec18b51a92294ff5c043d736f26c6f3d352b2b0d519c481e10afe751
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7548
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50