Protein

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Genbank accession
AUR83447.1 [GenBank]
Protein name
head-closure protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MRGKQEMFTGARGLITETTATNFPADACTDLLNVDLGKDGSITTRFGLTDEKGGVITQSMRDQYNFVTSTPPFSQATDQVRQNYTWSNAGGVQGISIEVVRVGLQLFLFMHGDTISLTPLRVVDIEKEGTLLLRPTSALTTMMEFSSGNGRLYVASPDLEPFYVEIDAEFDEITVEKIDLQIRDLDGIDEGTESQSRPVTLTNEHDYNLRNQGWPYLNNVTAVQDREGGSTAQVKPINYTKQILNVYPSNSDLYYLCKAQSAEIPQAINAFSPYVLGDLQLGNTPAPKGHYIVDAFNIDRDLAGIEETFQRPRATAFYSGRAWWSGVQDNKLSSTVFFSQAGRDAKLSGRCYQVADPTSEEINDLVATDGGVITVQEMSAVIAMRTIGQFLVLFADNGVWSISGTDGSNFSAVDASVSKVSENGAISASSIIEHDGGLYYFGKSAIYRVVPDSDVAIQLTEQNLTEGTIKSFYLGIGGNALTTAKGVSSTRDGKIYWNFLEAGQEDRYNLNRQLILDTNTGAWTVYQYGYDPDIRVMGMVDTAELFLSTINDALVYDSNDDVVTESDDNTQVTVEGGSEISETEGAGSKIVSIVNVDGATGILYGELTSQTFTDWSTRSNLPYEHYFEMGFNAMGGNATKGSPVYVNSFFARDLGLTSDEETPVIPDLPERESVRLFNTYWQVLEKL
Physico‐chemical
properties
protein length:687 AA
molecular weight: 75370,66190 Da
isoelectric point:4,35901
aromaticity:0,09753
hydropathy:-0,26579

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUR83447.1
1 687
Domain Start End Length (AA) Confidence
N-terminal 1 198 198 0,9424
Central domain 199 398 201 0,3097
C-terminal 399 687 288 0,0400
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-198
Central
199-398
C-terminal
399-687

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.034.X._10N.261.46.B7
[NCBI] 		1881190 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio breoganii
[NCBI] 		553239 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUR83447.1 [NCBI]
Genbank nucleotide accession
MG592419 [NCBI]
CDS location
range 11901 -> 13964
strand +
CDS
ATGCGAGGAAAGCAAGAAATGTTCACAGGTGCGCGTGGTCTCATAACTGAGACTACCGCCACGAACTTCCCTGCCGATGCATGTACCGACTTGCTGAATGTTGACTTAGGAAAGGACGGCTCAATCACGACACGCTTCGGTCTAACCGATGAGAAGGGTGGTGTTATAACGCAGTCAATGCGTGACCAGTACAACTTCGTGACGAGCACTCCGCCATTTTCTCAGGCAACCGACCAAGTGCGACAGAACTATACGTGGTCTAATGCAGGTGGTGTGCAGGGCATTAGTATTGAGGTGGTGCGTGTCGGTCTGCAACTATTCCTATTCATGCACGGTGATACTATATCGCTGACACCACTACGTGTGGTGGACATAGAGAAGGAGGGTACTCTACTGCTACGGCCTACCAGTGCGCTGACCACCATGATGGAGTTCTCTAGTGGTAACGGCAGACTGTATGTAGCGTCACCAGACCTAGAGCCATTCTATGTGGAGATAGATGCAGAGTTCGACGAGATAACTGTAGAGAAAATCGACCTACAGATTCGAGACTTGGATGGTATAGACGAAGGCACAGAGAGCCAGTCCCGTCCGGTAACGCTAACAAATGAACACGACTACAACCTACGTAATCAGGGGTGGCCGTACCTTAATAATGTGACAGCGGTACAAGACCGTGAAGGTGGTAGCACAGCACAAGTTAAGCCTATAAATTACACCAAGCAAATACTGAACGTGTATCCATCAAACTCTGACCTTTACTATTTATGCAAGGCGCAGTCTGCGGAGATACCTCAAGCAATAAATGCATTCTCTCCTTATGTACTTGGAGACTTGCAGTTAGGTAATACGCCCGCACCTAAAGGGCATTATATTGTCGATGCATTCAATATCGACCGCGACCTAGCAGGGATAGAGGAAACGTTCCAACGCCCAAGAGCGACAGCGTTCTACTCAGGCCGTGCGTGGTGGTCAGGTGTGCAGGATAACAAACTGTCATCAACAGTATTCTTTAGCCAAGCAGGGCGAGACGCGAAACTATCAGGCCGATGCTACCAAGTAGCTGACCCTACAAGTGAGGAGATTAACGACCTTGTTGCTACTGACGGTGGTGTGATTACCGTGCAGGAAATGAGCGCAGTGATAGCCATGAGAACAATAGGCCAGTTCCTAGTACTGTTCGCTGATAATGGCGTGTGGTCTATCTCAGGTACGGATGGCTCAAACTTCTCAGCAGTGGATGCATCGGTATCCAAGGTATCTGAGAACGGGGCAATCTCAGCATCAAGTATTATTGAGCATGATGGCGGACTGTACTACTTTGGCAAGAGCGCGATATACCGTGTGGTACCTGACTCAGATGTTGCGATACAACTTACTGAGCAGAACTTGACTGAGGGTACAATCAAGAGCTTCTATCTAGGCATAGGGGGCAACGCTCTTACTACAGCTAAGGGTGTTAGTTCTACTCGTGACGGAAAGATATATTGGAACTTCCTAGAAGCAGGACAAGAGGACAGATATAATCTGAACCGACAGTTAATCCTAGATACCAATACGGGCGCATGGACTGTGTACCAGTATGGGTATGACCCTGACATCCGTGTTATGGGTATGGTGGACACTGCGGAGCTATTCCTTAGTACTATCAATGATGCGCTAGTGTACGACAGTAACGACGATGTGGTTACTGAGAGTGACGACAACACGCAGGTAACGGTTGAAGGTGGCTCAGAGATAAGCGAGACGGAGGGCGCAGGCAGTAAGATAGTATCTATTGTGAATGTAGACGGTGCCACTGGCATCCTGTACGGTGAGCTTACCTCACAAACGTTCACTGATTGGAGCACAAGAAGTAACTTGCCATATGAGCATTACTTTGAGATGGGCTTCAATGCTATGGGTGGTAATGCCACGAAAGGCTCTCCTGTGTACGTGAACAGCTTTTTCGCTAGGGACTTAGGGCTAACCTCAGATGAGGAGACTCCTGTCATTCCTGACCTACCTGAGAGAGAATCAGTGAGACTATTCAATACATACTGGCAAGTTTTGGAGAAACTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
56db8a8bb448596e83212915c760c8b464fccdf27cd496a3abcd6c7b33590eba
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5343
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank