Protein

View in Explore
Genbank accession
UPW35768.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MVYDKHEWQDGELITSGKLNHMELGIQLADKQVSVKDYGAVGDGVADDTTSFINAFSENKGTKVIIPTGTYLITKQVSIFGDVEFQNAKVISTNNSQDYMFNVDGLDEINIVGFKYNNDNGRGAIKISNTKTVRLTSFDISGYSAETAYHKTDSALMLDNNTTIYLDDIKVHDHGFQYGAELEHLNRCISIQGDKTKTVIARGLQFSKANQGLVLSTPNGNVIVSDSSIDNTTDNSMYLLACLTFMATNVRFDDYYDESVIMGSGDYSFTNCWFSNVPNKVFGLNNDTVGLSIIGCNIIQSDKHSGQIVSFRDVNYTLNTFIFENNRIVTAPDSTNNDLFHLGQINLFSIKNNTIKTFSISDGRNMFAFRNSDSNAPYTGVIKDNYVMPITKDVVIGTYYFARLYKEVGKVEISDNYISNGRMPMDNASVIYNGQKFFTRLGYVIDRTTRQSLYATTIPTKGRFNIGDVVYNTDPSNGVFAWVRMTTGLNNVSGVDWKTVSVN
Physico‐chemical
properties
protein length:503 AA
molecular weight: 56014,97750 Da
isoelectric point:5,24615
aromaticity:0,10934
hydropathy:-0,27237

Domains

Domains [InterPro]
DC_2249
ATT
5–171
DC_2249 DC_2129
IPR012334
STR
24–495
IPR012334
IPR011050
STR
28–281
IPR011050
IPR024535
ENZ
33–233
IPR024535
UPW35768.1
1 503
Architecture
ATT
STR
ATT 5-171 | STR 172-503
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UPW35768.1
1 503
Domain Start End Length (AA) Confidence
N-terminal 1 49 49 0,9745
Central domain 50 432 384 0,9886
C-terminal 433 503 70 0,9372
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-49
Central
50-432
C-terminal
433-503

Taxonomy

  Name Taxonomy ID Lineage
Phage Liquorilactobacillus phage UCMA21115
[NCBI] 		2936822 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Liquorilactobacillus mali
[NCBI] 		1618 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UPW35768.1 [NCBI]
Genbank nucleotide accession
ON117153.1 [NCBI]
CDS location
range 1799 -> 3310
strand +
CDS
ATGGTTTATGATAAACACGAGTGGCAAGATGGTGAATTGATAACATCTGGTAAGTTAAACCACATGGAACTTGGGATACAATTAGCGGATAAACAAGTTTCGGTTAAGGATTACGGTGCAGTTGGAGATGGCGTTGCCGATGACACAACGTCTTTTATTAATGCTTTCTCAGAAAATAAAGGAACTAAGGTGATTATTCCTACTGGTACGTATCTAATAACTAAGCAAGTATCTATATTTGGGGATGTCGAATTTCAAAATGCAAAAGTTATAAGCACTAACAATTCACAGGATTACATGTTTAATGTTGATGGTTTAGATGAGATTAATATTGTTGGGTTCAAGTATAATAATGATAATGGTAGGGGTGCTATTAAAATATCTAATACTAAAACAGTTAGATTGACAAGTTTTGATATTTCAGGGTATTCAGCAGAGACGGCCTATCATAAAACAGATAGCGCACTAATGCTGGATAATAACACAACTATTTATTTAGATGATATCAAAGTTCATGATCATGGTTTCCAATATGGAGCAGAGTTAGAACATTTGAACCGTTGTATATCTATTCAAGGAGATAAAACAAAAACTGTAATTGCTAGAGGACTTCAATTTAGTAAGGCAAATCAAGGTTTAGTATTATCAACACCAAATGGAAATGTTATTGTTTCTGATAGTTCAATTGATAACACTACGGATAACTCGATGTATTTACTAGCATGTTTAACTTTCATGGCTACTAATGTACGTTTTGATGATTATTATGATGAAAGTGTAATAATGGGTAGTGGGGATTATAGTTTTACAAATTGTTGGTTCTCAAATGTTCCCAACAAGGTGTTTGGTCTAAATAATGATACTGTTGGATTGTCTATTATTGGTTGTAATATAATTCAAAGTGATAAGCATTCTGGTCAAATAGTTAGCTTTAGAGATGTAAACTATACGCTTAACACTTTTATTTTTGAAAATAATAGAATAGTAACCGCACCAGATAGCACAAATAACGATCTATTCCACTTGGGTCAAATCAACTTGTTTTCAATAAAAAATAATACAATAAAGACGTTTAGCATATCAGACGGTAGGAACATGTTTGCGTTTAGAAATTCAGACAGTAATGCACCATATACTGGAGTTATAAAAGATAATTATGTAATGCCAATAACTAAAGACGTAGTTATTGGAACGTATTATTTTGCAAGATTGTACAAAGAGGTTGGAAAAGTCGAAATTTCAGATAATTACATATCAAACGGTAGAATGCCTATGGATAATGCTTCGGTAATATATAACGGACAAAAATTCTTTACTCGTTTAGGTTATGTTATCGATAGAACAACAAGACAATCATTATATGCCACAACCATTCCCACTAAAGGACGGTTTAACATTGGTGATGTTGTTTATAATACTGATCCATCAAACGGTGTATTTGCTTGGGTTAGAATGACAACAGGATTAAATAATGTTTCTGGTGTTGATTGGAAAACAGTTAGTGTTAATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
ae44fdf4dcfcc680a16e463bb56045fe0a4634470345152312909b0d14336c46
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7901
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Molecular approaches to uncover phage-lactic acid bacteria interactions in a model community simulating fermented beverages Ledormand,P., Desmasures,N., Bernay,B., Goux,D., Ru,O., Midoux,C., Monnet,C. and Dalmasso,M. 2022 35953188 GenBank