Protein

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Genbank accession
WPJ70084.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,91
Protein sequence
MALKTKIIVQQIMNIDDTTTTASKYPKYTVVLGTSISSITASELTAAVEVSAASAAAAKDSEIAAKESEINAKDSENLSANYANSSEASATQSATSATEAKRQADLSKDSADASAISASQSAASATKAAESSAAAKTSETNALESSAAAKTSETNAKTSETNAKTSETNAAAYAAAAKTSETNAADSAASASDSKGFRDEAEAFAAQASTSALAAKNSETNTKTSEINSKASEDAAKLAQQGASDSANTATQAMTTIQGLKSDVEQLKADTQTIKEGAATEIRAAKTEAVGAIDTAKVNAIAEITPLKQAAEDAATLAGQKAVTATEQATAAAGSATTAGEQAVAASSSATRAETAANKAEQTLSISLLKDQNLADLSDKVQARINLSVDRLKQSADSSRIYDPTNRYNLVVMDTGSWGVYDDTSNVFKPLGVGQGGTGAWDAEGARNNIGALSKGGDTATAMIATKHSYPAGSTGQILGWSWRSIVEGYGIGTATADFYVNHTVGSVTYACIKPTRVTGESWEYLFSDFGEMSNIRSLIISRNTGAAGEASGNMELSYGAGQVTQYAARVDFYDGTARSVLNTYDATRLTTLLPSAGVICRRGIGGNYQANSYSFSWENPGVDVWIDSTRIGRVTLDPTSDIDYKEQVEPWDGKSALNNINQLELVTFIFKDDIKRRVRRGIIAQQAATIDPEYTHSSEDKEGNTILSLDTNVLLLDALAAIQVLSARVSKLESLLEDKPTTLSEDPAPNQDLP
Physico‐chemical
properties
protein length:755 AA
molecular weight: 78675,33080 Da
isoelectric point:4,73482
aromaticity:0,05033
hydropathy:-0,34464

Domains

Domains [InterPro]
DC_0608
ATT
2–206
DC_0608 DC_1675
Coil
Unmapped
250–270
Coil IPR030392
IPR030392
CHP
641–737
IPR030392
WPJ70084.1
1 755
Architecture
ATT
STR
ATT 2-206 | STR 214-737 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPJ70084.1
1 755
Domain Start End Length (AA) Confidence
N-terminal 1 140 140 0,9432
Central domain 141 396 257 0,1043
C-terminal 397 755 358 0,8073
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-140
Central
141-396
C-terminal
397-755

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage RA40
[NCBI] 		3075146 No lineage information
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPJ70084.1 [NCBI]
Genbank nucleotide accession
OR242313.1 [NCBI]
CDS location
range 41386 -> 43653
strand -
CDS
ATGGCACTTAAAACTAAAATTATTGTACAGCAGATTATGAACATAGATGACACTACAACTACTGCTAGTAAATATCCTAAGTACACAGTAGTTTTAGGTACTTCTATTAGTTCTATTACTGCTAGCGAACTAACAGCGGCTGTTGAGGTCTCTGCTGCTTCTGCTGCGGCAGCAAAAGATTCTGAAATTGCAGCAAAAGAATCTGAAATAAATGCTAAGGACTCTGAGAACCTATCTGCAAATTATGCTAACTCTTCAGAAGCTTCTGCAACTCAATCTGCTACTTCTGCTACTGAAGCGAAGAGACAAGCTGATTTATCTAAAGATAGTGCTGATGCCTCTGCTATTTCTGCTTCTCAATCTGCTGCGTCCGCTACTAAAGCTGCAGAATCATCAGCTGCAGCAAAAACTAGTGAGACTAACGCTCTAGAATCATCAGCTGCAGCAAAAACTAGTGAGACTAATGCAAAAACTAGTGAGACTAATGCAAAAACTAGTGAGACTAATGCAGCAGCATATGCAGCAGCAGCAAAAACTAGCGAGACTAATGCTGCTGATTCCGCTGCCTCTGCTTCTGACTCCAAAGGATTCAGGGATGAAGCAGAAGCATTCGCTGCACAAGCCTCCACATCAGCATTAGCAGCAAAAAACTCAGAAACTAATACAAAGACTAGCGAAATTAACTCAAAAGCTAGTGAAGACGCTGCTAAGCTAGCTCAGCAAGGTGCATCAGATAGCGCGAACACAGCTACGCAAGCGATGACCACAATACAGGGTCTTAAGTCCGATGTTGAACAGCTTAAAGCTGACACTCAGACCATTAAAGAAGGTGCGGCGACAGAGATTAGAGCAGCTAAGACGGAGGCAGTAGGAGCAATTGACACAGCTAAGGTAAACGCAATTGCTGAAATCACCCCGTTAAAACAAGCTGCGGAAGACGCTGCCACCTTAGCTGGACAAAAGGCAGTAACGGCTACAGAACAGGCTACAGCCGCGGCTGGAAGCGCTACAACCGCAGGAGAACAAGCCGTAGCAGCATCCAGTTCCGCAACTCGAGCTGAGACCGCAGCAAACAAAGCTGAACAAACTTTGAGCATATCTTTGTTAAAGGATCAGAACCTTGCAGACTTAAGTGACAAGGTACAGGCTCGTATAAACCTAAGTGTGGATCGTCTTAAACAGAGCGCTGATAGTTCCCGCATTTATGACCCGACAAACCGCTACAACTTAGTTGTAATGGATACAGGGTCTTGGGGTGTCTATGACGATACTAGTAATGTATTTAAACCTTTAGGAGTAGGACAGGGCGGCACGGGAGCTTGGGACGCAGAGGGTGCTCGCAACAACATCGGGGCGCTGTCCAAAGGTGGTGACACTGCGACCGCCATGATTGCTACTAAACATTCTTATCCTGCTGGCTCAACAGGGCAAATTTTGGGTTGGTCGTGGCGATCAATTGTAGAAGGCTATGGTATCGGAACGGCGACTGCTGATTTTTACGTAAACCACACAGTAGGAAGCGTCACATATGCCTGCATTAAGCCTACTCGAGTGACCGGTGAAAGCTGGGAGTATCTTTTTAGCGACTTTGGCGAAATGTCTAATATTAGAAGCCTGATTATTAGTCGTAACACAGGTGCGGCAGGAGAGGCGTCCGGTAACATGGAGTTGAGTTATGGGGCGGGGCAGGTGACACAGTACGCCGCTCGTGTAGATTTTTACGATGGAACTGCACGATCTGTTTTAAATACCTACGATGCTACTCGCTTAACAACTCTCTTACCCTCGGCAGGTGTCATTTGCCGTAGAGGTATTGGTGGTAATTACCAAGCAAATAGCTATTCTTTCTCGTGGGAAAATCCGGGAGTAGATGTATGGATTGATAGTACTCGTATTGGGCGAGTAACGCTGGATCCTACAAGCGACATTGATTATAAAGAACAGGTTGAGCCATGGGACGGTAAGAGTGCGTTAAACAATATCAATCAGTTAGAGCTCGTGACGTTTATCTTCAAAGATGATATAAAGCGTCGGGTACGTCGTGGAATCATTGCACAGCAAGCGGCAACCATAGACCCTGAATACACACACTCAAGCGAGGATAAGGAGGGAAATACAATTCTTTCGCTTGATACTAACGTGCTGTTACTGGATGCGCTTGCTGCTATCCAGGTGCTAAGCGCCCGTGTCAGTAAATTAGAGTCTTTGTTAGAAGATAAACCAACCACTCTATCTGAAGACCCCGCTCCAAATCAAGACCTTCCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
62028693038c14edfc67ee2c634fb1391083f3225e1ff6bdfc510c5fe4f8eb6e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6083
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophages to control Salmonella in UK pigs Clokie,M., Atterbury,R., Gigante,A., Thanki,A. and Hooton,S. 2021-11-10 — GenBank