Protein

View in Explore
Genbank accession
QGF19685.1 [GenBank]
Protein name
putative tubular protein A
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,51
Protein sequence
MAFDGAIKSLMQGVSQQVPRERLDGQVSVQLNRLSDVVNGNRRRPGARYLSTLPITANFNNRVFATYVDVADATNHVLVNTEDGQLVVLSEDFGTVLHTGTYPYLQASNANAIQTGTLRGDLYLANTQQAPTLLHGTTTQQDPDKTGFFFVRVPAFSKDYDITLSNSTGTYTYTHRTPNGQGSGDADLAKPSYVVSQLVSLINAETGTHGITAHAFDAYMYLVSTTATLSATTNAGSTYATASNQSRVALLSDLPARLPTIADGTLCAVGTTPRSFTWYEYEASTSVWKEAGAYGSPTGFSGMPIKLSLDGTYTVSTPEYEGRLAGSDITNEDPGFIEHGLTGFGVYQGRLVILAGPEVCMSASGRPERWYRSTVTSLLTDDPINVFSGAATTTNFSHCVQFNKDLLLFSRSCQAVVPSSNAAITPATAQIVITSQYTTDTLAAPTVVGRSVLYPMPRTESFAGILEMIPSNTTDSQYTSNDVTAHIPRYMPGSIQSITASTTSNSSVLLCTGDDRSLFIQDYLWSGDEKVQSAWHQWSVPYPIVCAWFVRDRVYLGMRDGTSVVVGTIEPQAGTTYLSYTRPFSDLYSLVTVTGGLTTVPQHLRSAYLSGAELFLTFADTSKGGMWAGIDSIDTGTWQVQTVRNVPDGQYFLGIRYMSVLTPTPPLVRDANGVVIGTSRTLLVRYELTLKDSGEFHAVVADSSRVLTDGTYSSLAYSNVELLPDQPTSATLGRVVIPVRAQAQETVATFEADADTDLCILDIEYVLQYRARRKRL
Physico‐chemical
properties
protein length:776 AA
molecular weight: 84057,04610 Da
isoelectric point:5,14117
aromaticity:0,09278
hydropathy:-0,10709

Domains

Domains [InterPro]
DC_0058
STR
1–776
DC_0058
IPR058003
TTP
5–775
IPR058003
QGF19685.1
1 776
Architecture
STR
STR 1-776
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QGF19685.1
1 776
Domain Start End Length (AA) Confidence
N-terminal 1 139 139 0,9913
Central domain 140 338 200 0,1200
C-terminal 339 776 437 0,1409
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-139
Central
140-338
C-terminal
339-776

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage MA2
[NCBI] 		2608298 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pectobacterium carotovorum subsp. carotovorum
[NCBI] 		555 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Pectobacterium

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGF19685.1 [NCBI]
Genbank nucleotide accession
MN271656 [NCBI]
CDS location
range 25632 -> 27962
strand +
CDS
ATGGCGTTCGATGGCGCGATTAAGAGCTTAATGCAGGGCGTGTCTCAGCAGGTTCCGCGTGAACGTCTGGATGGACAAGTCTCTGTTCAACTGAACCGTTTATCCGATGTGGTGAACGGAAACCGACGTAGGCCGGGCGCTCGGTATCTGAGTACCTTACCGATTACAGCTAATTTCAATAACCGTGTGTTTGCTACGTACGTCGATGTGGCGGACGCCACCAACCACGTGTTGGTGAACACAGAGGATGGGCAGCTGGTAGTTCTCTCAGAGGACTTTGGTACTGTACTGCATACCGGTACGTACCCGTATCTGCAAGCCAGTAATGCTAACGCTATCCAAACGGGTACACTTCGTGGTGACCTGTACCTAGCCAACACCCAACAGGCCCCTACACTACTGCACGGTACAACAACACAACAGGACCCCGATAAGACGGGATTCTTCTTTGTACGGGTACCTGCATTCAGTAAAGACTATGATATTACATTATCAAACAGTACCGGTACGTACACGTACACCCACCGGACGCCTAATGGGCAGGGTAGTGGGGATGCGGACTTAGCAAAACCGTCGTACGTTGTCAGTCAACTAGTAAGTCTTATTAATGCAGAAACCGGTACACACGGCATTACGGCACACGCCTTTGATGCGTACATGTACTTGGTGAGCACTACCGCTACGTTATCAGCGACGACTAACGCAGGTTCCACTTACGCTACGGCAAGTAATCAGTCTCGGGTGGCGCTACTTTCTGACTTACCAGCACGGTTACCCACTATTGCGGATGGTACATTATGTGCGGTGGGTACAACACCACGGTCCTTTACGTGGTATGAGTACGAGGCAAGTACATCGGTCTGGAAAGAGGCTGGTGCCTACGGAAGCCCTACCGGCTTTTCAGGTATGCCTATCAAGTTGTCGCTGGATGGGACGTACACCGTCAGCACGCCTGAGTATGAGGGGCGTTTAGCTGGTTCAGATATTACGAATGAAGACCCCGGCTTTATTGAGCATGGTTTAACAGGTTTCGGTGTGTACCAAGGCCGCTTGGTTATCTTGGCAGGACCCGAGGTTTGCATGAGTGCTTCCGGTAGGCCGGAGCGTTGGTATCGTAGTACGGTTACCTCTCTACTTACCGACGACCCTATCAACGTGTTCTCCGGTGCCGCGACCACTACCAACTTTAGCCACTGCGTGCAGTTTAACAAGGACTTACTGTTGTTCTCACGCTCTTGTCAGGCTGTGGTACCCAGCAGTAATGCTGCCATCACACCTGCAACCGCACAGATTGTTATTACCTCCCAGTACACCACTGATACGTTGGCAGCACCTACAGTTGTCGGTCGGTCGGTACTGTACCCTATGCCGCGCACAGAATCCTTTGCCGGTATTCTGGAGATGATTCCAAGCAACACTACGGACTCTCAGTACACATCCAACGACGTGACTGCCCACATCCCAAGGTACATGCCCGGTAGTATTCAGAGCATCACTGCCAGTACCACATCCAACTCCAGCGTACTGTTATGTACCGGAGATGACCGCAGCCTGTTCATTCAGGATTATCTGTGGTCGGGCGATGAAAAGGTACAGTCGGCGTGGCACCAGTGGAGTGTACCGTACCCTATCGTGTGTGCGTGGTTCGTTCGTGACCGCGTGTACTTGGGTATGCGCGACGGTACATCCGTTGTAGTCGGTACGATAGAACCGCAGGCCGGTACCACGTACTTATCGTACACCCGCCCGTTCTCAGACCTGTACTCGCTAGTGACAGTGACTGGTGGCTTGACTACGGTACCACAGCACCTACGCAGTGCGTACCTATCTGGTGCAGAACTGTTCCTAACCTTTGCGGATACCAGTAAGGGTGGTATGTGGGCAGGTATAGACTCCATTGATACAGGTACATGGCAGGTGCAGACAGTCAGGAATGTGCCTGACGGTCAGTACTTCTTAGGTATCCGGTACATGAGCGTACTTACGCCGACACCGCCACTAGTGAGGGATGCTAACGGTGTTGTTATCGGTACGAGTCGTACCCTGCTTGTCCGGTATGAGCTGACCCTGAAAGACTCAGGTGAGTTCCATGCTGTGGTGGCGGATAGTTCCCGTGTGCTGACAGACGGTACGTACTCCAGCTTGGCTTACTCCAACGTGGAGCTACTGCCAGACCAACCAACCAGCGCTACGTTGGGGCGTGTAGTTATTCCTGTACGCGCACAGGCTCAAGAGACGGTGGCTACGTTCGAAGCAGACGCCGATACCGACCTGTGTATCTTAGATATTGAATACGTCCTACAGTACAGAGCAAGGAGGAAGAGACTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
cb6f53cbe57aebf1b3c915bd612b33c96dc4f56f82b8cb3056b477fecaeda7f5
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2894
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage-based cocktail containing Podoviridae and Myoviridae bacteriophages inhibit growth of Pectobacterium spp. under in vitro and in vivo conditions Zaczek-Moczydlowska,M., Young,G.K., Trudgett,J., Fleming,C.C., Campbell,K. and OHanlon,R. 2020-04-02 — GenBank