Protein

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Genbank accession
YP_009948797.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MANTTDKSILTAAGKALLAQLNAEEKPLIIDKMIFANVPNRPEYPQPDDVVPTDHIVHQEQVEQRGRLSADSVIYSTTLTSGVGPFEFNWTGAYCSEYGVLVTIDHHALTPKSADEPGVAGNTLVRSVVLEYKDIAEITNITVDASTWQYNSNDRLKKMDADVAQALIDQNGKDWFIEGGFLVTPSGSAYSIKAGAGYVSGNRVAMEFDRSVQVTNKPSFIYIDAHREGTPTGEQVTLFDFVITAEEKDDYIDSSTGKDVKHFVCKIAQVLGDGSVSDLRPEGENKEYVKNSIINNDLLFNIHRSAKDKLNDVLSVKDVDKNIGGGENATEAFREAFATGRPIYMPGDDYLITGSIPLPTGGIQNLKVQGDASKTVIWNEVPDGDDLFVADDWVRGLTMRDFMVNVQKKSNEDGSFYYGNKGLLNIPESLRGVTIDNLWAHQMQRGINLGGKIWGKLAITNYHQYYLGDYAGDHSYGVMCANGANTVFMQFIDIIGGLYQGVELAGGVTSLLNFNVAGSSGNDEMRKPITVNNAHVVDIKNGWVEQVYQDDVGIGLGEAIEVKDSRNVKIDTVNVATGSIYVRNSDVEVDNIYLGNNLSGIKHDKDSHVKFGKVNHYVYSSQGKKQPTDGYVSDSLDEVSGIVAHDMNMLPDIPVRAIYADYRNVRDRGFGATNSSLVNISKSHDEPVPGFKSLQVTSNADYQGIRKVISNLNESLWYTVQALVYIDDADNCLAAYFSSTKNTGTVRNGYISTPRASMSYGEYKYVSLVAKPDANGDLSVDLVCKTQDGENPAKFYVSAFQLVEGFSDVLLSSTKQPKVNIPVESKLANPLLLQGQSLPFAPTNSGLVTFSDLLSGYRSGDRAIKVDSTSINHGVKVLETGLVDNLTYSIVALVKPELGTKPPFFKVTTGSSVFIDTHPPKDKSESSDWEYIYKTVKPVNGQIAVEVVSTTEDGTSGEISFYVDALQLYTGAKDEIS
Physico‐chemical
properties
protein length:977 AA
molecular weight: 106719,02880 Da
isoelectric point:4,89085
aromaticity:0,08802
hydropathy:-0,28833

Domains

Domains [InterPro]
DC_0787
STR
1–958
DC_0787
IPR022225
ATT
8–147
IPR022225 IPR012334
IPR011050
STR
313–605
IPR011050
YP_009948797.1
1 977
Architecture
ATT
STR
ATT 1-147 | STR 148-958 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009948797.1
1 977
Domain Start End Length (AA) Confidence
N-terminal 1 326 326 0,9928
Central domain 327 652 327 0,9703
C-terminal 653 977 324 0,9283
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-326
Central
327-652
C-terminal
653-977

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage PV94
[NCBI] 		1451050 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio vulnificus
[NCBI] 		672 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009948797.1 [NCBI]
Genbank nucleotide accession
NC_027368.1 [NCBI]
CDS location
range 28536 -> 31469
strand +
CDS
ATGGCCAATACCACGGACAAATCCATTTTAACCGCAGCAGGTAAAGCCCTGTTAGCGCAGTTAAACGCAGAAGAAAAACCACTCATCATCGACAAGATGATATTTGCCAATGTGCCAAACCGCCCAGAGTACCCACAACCAGATGATGTGGTACCCACTGACCATATCGTTCACCAAGAACAAGTGGAGCAACGCGGTCGCCTTTCTGCAGACTCGGTTATTTACAGCACCACGTTAACCAGTGGCGTTGGCCCGTTCGAATTTAACTGGACAGGTGCGTACTGCTCAGAATATGGCGTATTGGTCACAATCGACCATCATGCATTAACACCAAAATCAGCCGACGAACCAGGTGTTGCAGGTAATACCTTGGTGCGTTCTGTCGTACTTGAGTACAAAGACATTGCTGAAATCACCAACATCACGGTGGATGCTTCGACATGGCAGTACAACTCAAATGACCGTTTGAAGAAGATGGACGCGGATGTCGCCCAAGCGCTCATCGACCAGAACGGCAAAGACTGGTTTATCGAAGGTGGTTTCTTAGTAACGCCATCGGGCAGCGCATACAGCATCAAAGCGGGTGCGGGTTATGTTTCTGGTAACCGTGTCGCTATGGAATTTGACCGAAGCGTTCAGGTTACAAACAAGCCATCGTTTATTTACATCGACGCGCACCGTGAAGGCACACCAACTGGTGAGCAGGTTACTCTGTTTGATTTTGTGATTACTGCAGAAGAGAAAGACGACTACATCGACTCGTCAACGGGTAAGGATGTGAAGCACTTCGTTTGTAAGATTGCGCAGGTGTTGGGTGATGGTTCTGTGAGTGATTTGAGGCCTGAGGGGGAAAATAAAGAATATGTGAAGAACAGCATCATCAATAATGATTTATTGTTCAATATTCACCGAAGTGCCAAAGATAAATTGAATGATGTGCTGAGTGTAAAAGATGTAGATAAAAATATTGGTGGAGGTGAAAATGCTACCGAGGCATTTCGTGAAGCGTTTGCCACTGGGCGACCTATTTACATGCCCGGTGATGATTATTTGATTACAGGGTCAATTCCTCTACCAACTGGAGGAATACAAAACCTAAAAGTTCAAGGTGATGCCTCCAAGACAGTCATTTGGAATGAAGTTCCAGATGGCGATGATCTTTTCGTTGCTGACGATTGGGTTCGTGGACTTACCATGCGTGATTTCATGGTGAATGTTCAAAAGAAATCTAATGAAGATGGTTCCTTTTATTACGGAAATAAAGGGTTACTGAATATTCCCGAGTCATTACGCGGTGTGACGATTGATAACCTTTGGGCTCATCAAATGCAACGTGGCATCAATCTCGGTGGGAAAATTTGGGGTAAATTAGCGATAACAAATTATCATCAGTATTACCTTGGGGATTATGCCGGAGACCATAGTTATGGTGTGATGTGTGCTAACGGTGCGAATACCGTATTTATGCAGTTTATCGACATTATAGGCGGTTTGTATCAAGGGGTTGAATTGGCGGGTGGTGTTACATCGCTATTAAATTTCAACGTTGCGGGCTCATCTGGAAATGATGAAATGCGTAAACCGATAACGGTTAATAACGCTCATGTTGTTGACATTAAAAATGGATGGGTCGAGCAAGTTTACCAAGATGATGTGGGTATCGGTCTTGGTGAGGCTATTGAAGTCAAAGATTCAAGAAACGTTAAAATTGATACGGTTAACGTGGCGACAGGCTCTATTTACGTTCGAAATTCTGATGTTGAAGTTGATAATATTTACTTAGGTAATAACTTGTCAGGTATTAAGCATGACAAAGACTCCCATGTGAAATTTGGTAAAGTTAACCATTACGTATACAGCTCTCAAGGGAAGAAACAACCAACCGATGGTTATGTATCGGACAGTTTAGACGAAGTTTCTGGTATCGTTGCTCACGACATGAATATGTTGCCGGATATCCCTGTTCGCGCAATCTACGCTGACTATCGAAATGTGAGAGATCGTGGATTTGGTGCGACTAATTCCTCTCTTGTGAATATAAGCAAATCACATGATGAGCCCGTTCCTGGTTTCAAATCTTTGCAAGTGACATCAAACGCAGACTACCAAGGCATCAGAAAAGTCATATCCAATTTGAATGAAAGCCTTTGGTATACCGTTCAGGCTCTTGTTTATATTGATGATGCTGATAATTGCCTAGCGGCTTACTTTTCATCAACGAAAAACACTGGCACGGTTCGTAATGGCTATATATCAACACCTAGGGCTTCAATGTCATATGGTGAATACAAGTATGTTTCACTAGTTGCTAAGCCTGACGCGAATGGTGATTTGAGTGTTGATTTGGTCTGTAAGACTCAGGATGGAGAAAATCCAGCGAAATTCTATGTTTCAGCGTTCCAGTTAGTCGAAGGTTTTAGCGATGTTTTACTCTCTTCAACGAAGCAACCAAAAGTGAATATTCCAGTTGAGAGTAAATTAGCAAATCCACTGCTACTGCAAGGGCAAAGCTTACCATTCGCGCCAACTAATAGCGGTCTGGTGACGTTCTCTGATTTATTGTCCGGTTATCGTTCTGGAGATAGGGCGATTAAAGTGGATTCGACCTCCATTAATCATGGGGTAAAAGTATTAGAAACTGGCTTGGTTGATAATCTGACTTATTCCATTGTTGCTTTGGTTAAACCGGAGTTAGGCACAAAACCACCGTTTTTCAAAGTAACAACTGGGAGTTCAGTCTTTATAGATACTCACCCTCCAAAAGATAAATCAGAGTCTTCGGATTGGGAATATATCTATAAGACGGTTAAGCCAGTAAATGGACAGATTGCCGTTGAAGTGGTATCGACAACTGAGGATGGAACATCGGGTGAAATTAGTTTTTATGTGGATGCACTGCAGCTTTATACAGGCGCGAAAGATGAGATCTCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
7017363c2a84d68eb7b03ca8f474055c97da0aaffafec8d8c3e263af16dcee7b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7237
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Vibrio vulnificus Phage PV94 Is Closely Related to Temperate Phages of V. cholerae and Other Vibrio Species Pryshliak,M., Hammerl,J.A., Reetz,J., Strauch,E. and Hertwig,S. 2014 24732980 GenBank