Protein

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Genbank accession
YP_003090191.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 0,55
TSP
Evidence RBPdetect
Probability 0,86
TF
Evidence RBPdetect2
Probability 0,70
Protein sequence
MPQLQKVNLGTPPEGKDGDSVRAANVKANANVDVLSACVALGYNILSDNWTLAPSNVGTRFGLNMGVDGKVIVFPLASAVVANACLHFFNVSNPVTIGLQGKDGTQVKVLNTGDWATYVSDGGGYWHVAARGKMLPNEVVSGNLSVGGTLSVTGGIAGDLAASGKLVGGNCPNLLVNGSGELGSTGWNGTTFGPLQGGFGEGTLFINSNAINTGTWVVDQSSDIACGPGVVVTVSAEISTGGLNAGRVYIKSEAFKADGTFIGTVASTPSITTKRDASFQSGAGVTPAGTASIRVSKVADAAPNISAFGVSFRRIKVERGNVPSLYSQEASIAYLAGAPVFAGVPKFGSYTPWHSGNLNPANYANLATDQTFKGTNYFERAIVSTFSPSDYGSVFAANRLTGYLFSDWSKSSAAVRVECGDNGAAYQLLHAQKSGQRDLFAMSIHAGGSASATAVASFTFTGTVNAHMFYDGGNAAFIGSLSQGSDYRIKKSVENIDTAEAYEGVRRLRFVDYLKTTNVGEDAERRIAGVIAHEAQAVFSNVVSGEKDAVEDDGRMKLQTVDYNGLGVYVGAAVQHMANLIESLASDVAMLRAKLETLEGAS
Physico‐chemical
properties
protein length:602 AA
molecular weight: 62430,04160 Da
isoelectric point:5,82125
aromaticity:0,08472
hydropathy:0,01229

Domains

Domains [InterPro]
DC_0643
STR
6–602
DC_0643
IPR030392
CHP
485–543
IPR030392 Coil
IPR030392
CHP
485–588
IPR030392
YP_003090191.1
1 602
Architecture
STR
STR 6-602
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_003090191.1
1 602
Domain Start End Length (AA) Confidence
N-terminal 1 142 142 0,8582
Central domain 143 341 200 0,2091
C-terminal 342 602 260 0,9063
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-142
Central
143-341
C-terminal
342-602

Taxonomy

  Name Taxonomy ID Lineage
Phage Burkholderia phage KS9
[NCBI] 		335797 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Burkholderia sp. LMG 21824
[NCBI] 		3158172 Pseudomonadota > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia sp. LMG 21824

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_003090191.1 [NCBI]
Genbank nucleotide accession
NC_013055 [NCBI]
CDS location
range 25126 -> 26934
strand +
CDS
ATGCCGCAACTTCAAAAAGTCAATCTCGGTACTCCACCGGAGGGAAAGGACGGAGACTCCGTCCGCGCTGCTAACGTCAAGGCAAACGCCAACGTCGACGTGCTGTCCGCCTGCGTTGCGCTGGGATATAACATCCTAAGTGATAACTGGACGCTTGCGCCTAGTAATGTCGGCACGCGATTCGGGTTGAACATGGGTGTGGACGGCAAGGTCATTGTGTTTCCGCTTGCCTCGGCGGTCGTTGCCAACGCCTGCCTTCACTTTTTCAATGTCAGCAATCCTGTAACGATCGGATTGCAGGGTAAAGACGGAACCCAAGTCAAGGTGCTTAATACCGGGGACTGGGCGACCTACGTCTCCGACGGCGGCGGTTATTGGCACGTCGCTGCCCGCGGGAAAATGCTCCCGAATGAAGTGGTGTCCGGGAATCTTTCGGTTGGTGGCACGCTGTCCGTTACCGGGGGAATTGCGGGCGATCTTGCGGCGAGCGGAAAGCTCGTCGGCGGTAATTGTCCGAACCTTCTGGTGAACGGGTCCGGCGAGCTGGGAAGTACTGGGTGGAATGGGACGACATTCGGTCCATTGCAGGGTGGGTTTGGAGAAGGGACGCTCTTCATCAATTCCAATGCAATCAACACTGGCACGTGGGTTGTCGATCAATCCAGCGATATTGCTTGTGGTCCGGGCGTCGTGGTCACGGTGTCGGCCGAGATCAGTACTGGGGGGTTGAACGCCGGCCGAGTGTATATAAAGAGCGAAGCGTTCAAGGCCGATGGAACGTTTATTGGCACTGTTGCTTCGACGCCTTCAATAACAACGAAACGAGATGCTTCCTTTCAGAGTGGTGCGGGCGTAACCCCAGCAGGAACGGCTTCGATCAGGGTGAGCAAGGTTGCGGATGCCGCACCGAACATATCAGCGTTTGGCGTTTCATTTCGACGGATCAAAGTCGAAAGGGGCAACGTGCCCTCGCTCTATTCCCAAGAGGCGAGCATTGCCTATCTTGCAGGCGCACCGGTATTTGCTGGGGTGCCGAAGTTCGGCTCGTATACGCCGTGGCACAGCGGAAATTTAAATCCCGCGAACTATGCAAATCTGGCAACGGACCAGACATTCAAGGGAACGAACTACTTCGAAAGGGCCATCGTTTCGACGTTCTCCCCGTCGGACTATGGTTCGGTGTTCGCTGCAAATCGATTGACCGGATATCTGTTCAGTGATTGGTCAAAATCCTCAGCAGCCGTTCGCGTCGAATGTGGTGACAATGGCGCCGCCTACCAACTTTTACACGCTCAGAAATCTGGGCAGCGCGATTTATTCGCGATGTCCATTCACGCTGGTGGATCAGCAAGCGCAACTGCGGTGGCCTCCTTCACGTTCACAGGAACCGTAAATGCGCATATGTTTTACGACGGAGGGAATGCGGCGTTTATCGGCTCGTTATCGCAAGGCTCAGACTACCGAATCAAGAAATCGGTGGAAAACATTGATACTGCTGAAGCGTACGAGGGCGTGCGGCGCTTGCGTTTCGTCGACTATCTGAAAACTACCAACGTAGGCGAGGACGCGGAGCGCAGAATCGCGGGCGTGATCGCACACGAAGCGCAGGCAGTGTTCTCGAATGTCGTCAGTGGCGAGAAAGATGCTGTAGAGGACGATGGTCGAATGAAGCTGCAAACCGTCGATTACAACGGCCTCGGAGTATACGTCGGCGCAGCGGTGCAGCACATGGCGAATCTGATCGAGTCGTTGGCGTCAGACGTCGCGATGCTGCGCGCCAAGCTGGAGACTCTCGAGGGGGCGAGTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
5c29cebf8085a2a7057ffd3f988b6fdf98f7a6433fead15d8a630bf7291a25f9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7369
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequence and characterization of KS9, a prophage of Burkholderia pyrrocinia LMG 21824 Lynch,K.H., Seed,K.D., Stothard,P. and Dennis,J.J. 2010-02 — GenBank