Protein

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Genbank accession
URA06889.1 [GenBank]
Protein name
putative homing endonuclease
RBP type
TSP
Evidence DepoScope
Probability 0,71
Protein sequence
MAVAGRRVRAAHRLAVSKRPHGASANRVVSDNVGSNTAGLKSGRVSNRGNNVCQTGLRTPYPCQNNATIARHLTLRL
Physico‐chemical
properties
protein length:77 AA
molecular weight: 8203,26030 Da
isoelectric point:11,99997
aromaticity:0,01299
hydropathy:-0,47792

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
URA06889.1
1 77
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0009
Central domain 11 66 57 0,0025
C-terminal 67 77 10 0,9944
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-66
C-terminal
67-77

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage Langgrundblatt2
[NCBI] 		2939129 Uroviricota > Caudoviricetes > Stanbaylleyvirinae > Shirevirus langgrundblatt2 >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
URA06889.1 [NCBI]
Genbank nucleotide accession
ON189043 [NCBI]
CDS location
range 36962 -> 37195
strand -
CDS
ATGGCGGTGGCTGGGCGCAGGGTCAGGGCGGCGCACCGGCTGGCGGTCAGCAAGCGCCCGCATGGGGCCAGCGCTAACCGCGTCGTAAGTGACAACGTAGGATCAAACACGGCCGGGCTAAAATCCGGCCGTGTTTCTAACAGGGGAAACAACGTATGTCAGACCGGGTTAAGAACCCCTTACCCGTGCCAGAACAATGCGACAATTGCGCGTCATTTGACGTTGCGTTTGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
a1d9ade784a3e6007e3873e9e3c33c072447c1912306c2fd35338b2238e4cd53
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3813
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation of novel Xanthomonas phages for the plant pathogens X. translucens and X. campestris Erdrich,S.H., Sharma,V., Schurr,U., Arsova,B. and Frunzke,J. 2022 — GenBank