Protein

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Genbank accession
YAO55276.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSLTKPRCFRKASYLSQLGTLQNLANTGDDVLVIDVDYEFTNGETVDFKGQLVRIECEAKFIGDGALIFTNMASGSVVEKPFMESKSTPWVIYPWTEDGKWITDAQAVAATLKQSKTEGYQPRVNDWVKFPGLEALMPQEVKDQYVVSTLDIRDCVGVEVRRAGGLMAAYLFRNCHHCKVIDSDTIIGGKDGIITFENLGGEWGIGNYAIGGRVHYGSGSGVQFLRNNGGASHNGGVIGVTSWRAGESGFKTWQGSVGAGTSRNYNLQFRDSVALSPVWDGFDLGSDPGMAPEEDRPGDLPVSQYPMHQLPNNHMVDNILVMNSLGVGLGMDGRGGYVSNVTVQDCAGAGILAYAFNRTFSNITVIDCNYMNFNSDQIIIIGDCIVNGIRAAGIKPQPSKGMVISAPNSTLSGIVGNVPPDRILAGNILDPVLGHTRINGFNSDSAELSFRIHKLTKTLDSGAIRSTLNGGPGTGSAWTEMTAISGSAPNAVSLKINRGDFKATEIPVAPTVLPDEAVRDHNSIALYFDQEALWALVKKPNGSLTRMKLA
Physico‐chemical
properties
protein length:550 AA
molecular weight: 59110,18900 Da
isoelectric point:5,56541
aromaticity:0,08000
hydropathy:-0,13709

Domains

Domains [InterPro]
IPR011050
STR
1–550
IPR011050
IPR012332
STR
2–550
IPR012332
IPR015331
RBD
3–550
IPR015331
YAO55276.1
1 550
Architecture
STR
STR 1-550
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YAO55276.1
1 550
Domain Start End Length (AA) Confidence
N-terminal 1 28 28 0,9253
Central domain 29 443 416 0,9860
C-terminal 444 550 106 0,9305
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-28
Central
29-443
C-terminal
444-550

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_CECAV_051
[NCBI] 		3459925 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YAO55276.1 [NCBI]
Genbank nucleotide accession
PX123773.1 [NCBI]
CDS location
range 40070 -> 41722
strand +
CDS
ATGTCATTAACTAAACCACGTTGCTTCAGGAAGGCAAGCTATCTAAGTCAGTTAGGCACTTTGCAGAATCTAGCTAACACTGGAGATGACGTACTTGTTATCGATGTTGACTACGAGTTCACTAACGGAGAGACTGTAGACTTCAAAGGTCAACTGGTTCGTATAGAGTGCGAAGCTAAGTTCATTGGTGATGGTGCTTTGATCTTCACTAATATGGCTAGTGGTTCTGTGGTAGAAAAGCCTTTCATGGAAAGCAAGTCCACACCTTGGGTTATTTACCCTTGGACAGAAGATGGAAAGTGGATTACAGATGCACAAGCTGTTGCTGCTACATTGAAACAATCTAAGACCGAAGGATATCAACCGAGAGTCAACGATTGGGTTAAGTTTCCCGGACTTGAAGCATTGATGCCTCAAGAGGTGAAAGATCAGTATGTAGTATCCACACTGGACATCCGTGACTGCGTAGGTGTTGAGGTAAGACGCGCTGGCGGCCTTATGGCAGCTTATTTGTTTCGCAACTGTCATCACTGTAAGGTGATTGATTCTGACACCATCATTGGTGGTAAAGACGGAATCATAACCTTTGAAAACTTAGGTGGTGAATGGGGAATCGGTAACTATGCCATAGGTGGTCGTGTACATTATGGCTCAGGAAGTGGTGTGCAGTTCCTTCGAAATAATGGAGGTGCATCTCACAACGGTGGAGTTATTGGTGTAACCTCATGGCGTGCAGGTGAGTCTGGGTTCAAGACATGGCAAGGTTCTGTAGGTGCAGGTACATCTCGTAACTATAACCTTCAGTTCCGTGACTCAGTTGCACTGTCTCCCGTGTGGGATGGCTTTGACTTAGGCTCAGATCCAGGAATGGCACCAGAAGAGGACAGACCGGGAGACTTGCCTGTGTCTCAATACCCTATGCATCAGCTACCTAACAACCACATGGTTGATAACATCCTTGTTATGAATTCATTAGGTGTGGGTTTAGGTATGGATGGTCGCGGTGGATATGTATCTAATGTTACCGTACAAGATTGTGCAGGTGCAGGTATCCTTGCTTATGCATTCAACCGTACCTTCTCTAACATTACGGTGATTGACTGCAACTACATGAACTTCAATTCAGACCAGATAATCATCATTGGTGACTGCATCGTGAATGGCATCCGCGCCGCTGGTATTAAACCTCAGCCATCTAAGGGTATGGTCATCAGTGCACCTAACTCGACCCTTAGTGGGATTGTAGGTAACGTGCCACCAGACCGTATCCTTGCAGGTAACATCCTTGACCCTGTGTTGGGTCATACAAGGATTAATGGGTTTAATAGTGACTCGGCAGAACTGAGCTTCAGAATCCACAAGCTTACCAAGACCTTGGATAGTGGTGCTATTCGCTCTACGCTGAATGGTGGGCCGGGTACAGGTTCTGCATGGACGGAGATGACTGCAATTTCAGGGTCAGCTCCAAATGCTGTCTCGTTGAAGATTAACCGTGGAGACTTCAAGGCAACTGAGATCCCCGTGGCACCTACTGTGCTTCCAGATGAAGCGGTAAGAGACCACAACTCTATTGCGCTCTATTTCGATCAGGAGGCTCTTTGGGCTTTAGTTAAGAAACCAAACGGAAGTCTTACACGAATGAAGCTTGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0874555544b8f497cb33b98d41c967b441ec8b6cf8d10d50c5d955aa22571d79
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8700
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50