Protein

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Genbank accession
YP_009844235.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,68
Protein sequence
MATEADLIQKFKDLNIPVGADFEELIHAAFAGSNLADIVNSYDSRIATVETDLATKADDSKVVHDNKNGTEQLNGAQVQPFNKLSDTIGGRNLLPVSNYNSGYVNGADGTISHADGIAKEVISNFIPVDITQSYYCQIIQQVNANQAWWGIGFYDANKQFISRPSTGNTTVTGTITSVIRMLPLGFPNISIPNVSTVVFPANTAYVRVSFRTYGNPIQASLEKSSVLSDWTPAPEDKADDSKVVHNSGNEEIGGQKTFDTAPIDKTTGNPYSTKSDIATAINAATANMVDSTKDTNFTGNITFDNTPKMINGDPLVTASQTGDVNKLLTKDKSNYVNAINELSSIVDRFYPVASQAIPTDNVSYSNQGLVYNYDPSNNTVTFRKSDPSYSINYDTSVVGTNFTENAGGSAPLGGIRIYFGFKAIHYVNKTEGTLSDINYYVWNPNDDSTVKSGELGLLKAIPYYLTSENFEVGSSYTIDFSGNGMNLSTSGNNRISPRLVISNEGNGVLNITPYHGEDFKDDKSEGYWIYPYITKMISYSVDTTAMKALPDGYSYDYVKDTNPSTTGNYLTAWGQGSYQYKFDLNNLGNGYSIDSMGSSITINVSIKGTAPSFASGYHTTDGYKSSQLPNNTFTTNSGDVSGDATSSALGKSYINLLWKLSKEDVVSSSYTAYYQAVSAGGSVFYAIKLVINNDNTISIYAITPFYANISNVSDPSKNMSASSFASTTTISIVNNV
Physico‐chemical
properties
protein length:736 AA
molecular weight: 79549,61040 Da
isoelectric point:4,70828
aromaticity:0,10598
hydropathy:-0,33397

Domains

Domains [InterPro]
DC_1223
ATT
1–253
DC_1223
DC_1369
ATT
228–410
DC_1369
SSF69349
STR
232–262
SSF69349
G3DSA:6.10.140.2190
STR
233–261
G3DSA:6.10.140.2190
YP_009844235.1
1 736
Architecture
ATT
ATT 1-410 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009844235.1
1 736
Domain Start End Length (AA) Confidence
N-terminal 1 134 134 0,9482
Central domain 135 668 535 0,6097
C-terminal 669 736 67 0,3815
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-134
Central
135-668
C-terminal
669-736

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage SAC12B
[NCBI] 		2510941 Uroviricota > Caudoviricetes > Herelleviridae > Tybeckvirus SAC12B >
Host Lactobacillus brevis
[NCBI] 		1580 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009844235.1 [NCBI]
Genbank nucleotide accession
NC_048754.1 [NCBI]
CDS location
range 41041 -> 43251
strand -
CDS
ATGGCTACGGAAGCAGATTTAATTCAAAAATTTAAAGACTTAAATATACCAGTAGGAGCTGACTTTGAAGAGCTTATTCATGCGGCTTTTGCTGGGTCTAACTTGGCAGATATAGTAAATAGTTATGATTCTCGTATAGCTACGGTAGAGACTGATTTAGCAACGAAGGCTGACGATTCAAAAGTAGTACATGATAATAAAAATGGTACTGAACAACTTAATGGAGCTCAAGTACAGCCGTTTAATAAGTTATCAGATACTATTGGTGGTAGAAACCTTCTTCCCGTTTCAAATTACAACTCTGGTTATGTAAATGGCGCCGATGGAACAATATCACATGCCGATGGAATAGCTAAAGAAGTCATCTCAAACTTCATTCCGGTAGATATAACGCAAAGCTATTATTGTCAAATAATTCAACAAGTAAACGCTAATCAGGCATGGTGGGGAATCGGATTTTATGACGCTAATAAGCAATTTATCTCACGCCCTTCAACTGGAAATACAACAGTGACGGGAACTATAACATCAGTTATAAGAATGTTGCCTTTGGGGTTTCCTAATATTTCAATTCCGAATGTTTCTACCGTAGTTTTTCCAGCTAACACCGCTTATGTTAGAGTTTCTTTTAGAACTTATGGTAATCCAATTCAAGCAAGTTTAGAAAAATCATCAGTTTTAAGTGATTGGACGCCAGCTCCGGAAGATAAGGCAGATGATTCCAAAGTTGTTCATAATTCTGGAAATGAAGAGATTGGTGGTCAAAAAACTTTTGATACGGCACCAATAGATAAGACAACCGGAAACCCATACAGCACTAAATCGGATATTGCAACCGCCATTAACGCGGCCACTGCAAACATGGTTGACTCTACTAAAGACACAAACTTTACTGGTAATATAACTTTTGACAATACTCCTAAGATGATAAATGGTGATCCATTAGTTACTGCTAGTCAAACTGGTGATGTAAATAAATTACTTACCAAGGATAAATCAAATTATGTTAATGCTATAAATGAATTATCATCAATAGTTGATAGATTTTATCCAGTAGCTTCACAAGCTATTCCTACTGATAACGTATCTTATTCAAATCAGGGATTGGTATACAATTATGATCCTAGTAATAATACAGTTACCTTTAGAAAAAGTGATCCTAGTTATTCTATAAACTATGATACTTCAGTTGTAGGTACTAATTTTACTGAGAACGCAGGAGGGTCAGCCCCACTGGGTGGAATAAGAATATATTTTGGATTTAAGGCTATACATTATGTAAACAAAACTGAGGGTACCTTGAGTGATATAAATTATTATGTATGGAATCCTAATGACGATAGTACTGTCAAAAGTGGAGAATTAGGACTATTAAAAGCTATTCCTTACTACCTTACTAGTGAAAACTTTGAGGTTGGGTCAAGTTATACTATAGACTTTAGTGGTAATGGAATGAATTTATCAACATCTGGTAATAATAGAATATCTCCGAGATTAGTTATAAGCAATGAAGGTAATGGGGTATTAAATATAACTCCATATCATGGTGAAGATTTTAAGGATGATAAATCTGAAGGTTACTGGATTTATCCATATATAACTAAAATGATAAGCTACTCCGTTGATACTACTGCTATGAAAGCACTCCCAGATGGATACTCATATGATTACGTAAAGGACACTAATCCTAGTACTACTGGAAATTACTTAACGGCTTGGGGGCAAGGTTCCTATCAATATAAATTTGATTTAAATAACTTAGGAAATGGGTACAGTATTGATAGTATGGGAAGTTCAATAACTATTAATGTGTCCATAAAAGGTACTGCTCCATCCTTTGCAAGTGGGTATCATACTACTGATGGGTATAAATCTTCTCAGCTTCCTAATAATACATTTACTACGAATAGTGGTGATGTTTCTGGTGATGCTACTTCATCAGCATTAGGAAAGAGTTATATAAACCTATTATGGAAATTATCTAAAGAGGATGTAGTATCAAGTAGTTATACTGCTTATTATCAAGCAGTAAGTGCTGGAGGCTCTGTTTTTTATGCTATTAAGCTAGTAATAAATAATGATAATACTATTAGCATATATGCTATTACTCCTTTTTATGCTAATATTTCTAATGTTTCTGACCCATCTAAAAATATGTCCGCTTCATCATTTGCTAGTACTACTACAATATCAATAGTTAATAATGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a58e33ba593994685c3febe67f2ad623f1598e3f287dfe044307386ce7517570
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5218
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation of virulent Lactobacillus brevis phages Feyereisen,M., Mahony,J., O'Sullivan,T. and van Sinderen,D. 2019-04-26 — GenBank