Protein

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Genbank accession
YP_001700693.1 [GenBank]
Protein name
bacteriophage tail fiber (host specificity) protein; Lambda gp J homolog
RBP type
TSP
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSKGGGKGHTPREAKDDLKSTQQLSVIDALSEGPIVGPVNGLQSVLINNTPVVDADGNSNIHGVTVVYQVGETPQAPLEGFEASGAETVLGVEVKHDNPVTRTVVSENVDRLRFTFGVQMLQETTDKGDRNPSSVNLLIQFQRSGIWNTEFDITINGKITTQYLASVVADNLPPRPFSVRMVRVTPDSTTDRLQNKTLWSSYTEIIDIRQGYPGTAVAGLLVDAEQFGSQQVTRNYHLRGRIFQVPSNYDPDTRTYTGLWDGAFKPAYTNNPAWCTMDKLTHPRYGLGRRIGGADVDKWALYAIAQYCDQPVPDGFGGTEPRMTLNAYITTQRKAYDVLADFCSVMRCMPVWNGRKMTFIQDRPSDKAWTYTNGNVVGGRFKYSFSALKDRHNAVEVRYTDPLNGWQTSTELVEDHASQARYGRNLLKMDAFGCTSRGQAHRTGLWVMMTELLETQTVDFSVGAEGLRHTPGDIIEVCDNDYAGASVGGRITDLDISTRTLTLDREITLPESGATTLNIVGPDGKPFSTEIQSQPAPDRVVTKVLPETVQPYSIWGLKLPSLKRRLFRCVRIKENDDGTYAITALQHVPEKESIVDNGAHFDPLPGTTNSIIPPAVQHLTVSTDNDSTLYQAKAKWGTPRVVKDVRFVVRLTTGSGNEGDPVRLVTTATTSETEYAFHELPLGDYTLTVRAINGYGQQGEPASVAFSIQAPEAPSTIEMTPGYFQITVTPHQTVYDASVQYEFWYSATQLATAADIQSKAQYLGVGSFWIKDGLKPLHDAWFYVRSVNLAGKSVFAEASGRPGMTRKGIWIFLRD
Physico‐chemical
properties
protein length:815 AA
molecular weight: 89942,96320 Da
isoelectric point:5,83597
aromaticity:0,08957
hydropathy:-0,36896

Domains

Domains [InterPro]
IPR053171
Unmapped
1–814
IPR053171
DC_0129
STR
6–809
DC_0129
IPR055385
ATT
86–207
IPR055385 IPR032876 IPR055383 IPR057587
IPR003961
STR
613–703
IPR003961
IPR013783
STR
643–713
IPR013783
YP_001700693.1
1 815
Architecture
STR
ATT
STR
ATT
STR
ATT
STR 6-85 | ATT 86-207 | STR 208-330 | ATT 331-492 | STR 493-712 | ATT 713-813 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_001700693.1
1 815
Domain Start End Length (AA) Confidence
N-terminal 1 499 499 0,9050
Central domain 500 804 306 0,0270
C-terminal 805 815 10 0,0696
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-499
Central
500-804
C-terminal
805-815

Taxonomy

  Name Taxonomy ID Lineage
Phage Phage Gifsy-2
[NCBI] 		129862 Viruses >
Host Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
[NCBI] 		99287 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_001700693.1 [NCBI]
Genbank nucleotide accession
NC_010393 [NCBI]
CDS location
range 34606 -> 37053
strand +
CDS
ATGAGCAAAGGTGGAGGGAAGGGGCATACACCACGTGAGGCGAAGGACGATCTGAAGTCCACACAACAACTGAGCGTGATTGATGCCCTCAGTGAGGGACCGATAGTCGGCCCGGTGAACGGTCTGCAGAGCGTGCTGATTAATAACACGCCGGTGGTGGACGCGGACGGTAACAGTAATATTCACGGCGTGACCGTGGTATATCAGGTGGGGGAGACACCACAGGCACCGCTGGAAGGTTTTGAGGCTTCCGGCGCGGAAACGGTGCTGGGTGTGGAAGTGAAACACGATAATCCCGTTACCCGTACTGTTGTCTCAGAGAATGTCGACCGGCTACGCTTCACCTTTGGTGTACAGATGCTGCAGGAGACCACGGACAAGGGGGACCGTAACCCGTCCTCCGTGAATCTGCTGATACAGTTTCAGCGTAGCGGGATCTGGAACACAGAATTTGATATCACTATTAACGGCAAGATCACAACACAATATCTGGCATCGGTAGTGGCTGATAATTTACCGCCGCGCCCGTTCAGTGTCCGCATGGTCAGGGTGACACCGGACAGCACCACCGACAGGCTTCAGAACAAAACGCTGTGGTCGTCGTATACGGAAATCATCGATATCCGGCAGGGTTATCCTGGCACAGCGGTTGCCGGTCTGCTGGTGGATGCGGAACAGTTCGGCAGCCAGCAGGTCACGCGTAACTACCACCTGCGCGGACGTATTTTTCAGGTCCCCTCAAACTATGACCCGGATACCCGCACATATACCGGCCTGTGGGACGGGGCGTTTAAACCGGCGTACACGAATAACCCGGCGTGGTGCACGATGGATAAACTGACCCACCCCCGTTACGGGCTGGGCAGGCGTATCGGGGGGGCGGATGTGGATAAATGGGCGCTGTACGCCATCGCGCAGTACTGCGATCAACCGGTGCCGGACGGATTTGGCGGCACGGAACCCCGCATGACGCTTAATGCGTATATTACCACCCAGCGTAAGGCGTATGACGTTCTGGCGGATTTCTGCTCGGTGATGCGTTGTATGCCGGTATGGAATGGCCGCAAAATGACCTTCATCCAGGACCGCCCCTCCGATAAAGCATGGACCTACACCAACGGTAACGTGGTGGGCGGGCGCTTTAAATACAGCTTCAGTGCCCTGAAAGACCGCCATAACGCGGTAGAAGTGAGATACACCGATCCGCTGAATGGCTGGCAAACCTCCACGGAGCTGGTGGAAGACCATGCCTCACAGGCCCGTTATGGACGCAATCTGCTGAAAATGGACGCGTTCGGCTGTACCTCACGTGGACAGGCGCACCGGACGGGGTTGTGGGTGATGATGACGGAGCTGCTGGAAACGCAGACCGTGGATTTTTCTGTCGGTGCGGAAGGTCTGCGTCATACACCGGGCGATATTATTGAGGTCTGCGACAACGATTACGCCGGGGCGTCGGTCGGTGGGCGTATCACTGACCTGGATATTTCCACCCGCACGCTGACGCTTGACCGGGAAATAACACTACCGGAAAGCGGCGCCACCACGCTGAATATTGTCGGGCCTGACGGTAAGCCGTTCAGTACGGAGATTCAGTCGCAGCCCGCACCGGATCGGGTGGTAACGAAAGTCCTGCCGGAAACCGTGCAGCCATACAGTATCTGGGGGCTGAAACTGCCCTCCCTGAAGCGCCGCCTTTTCCGTTGCGTGCGTATTAAGGAGAATGACGACGGCACATACGCTATCACTGCCTTGCAGCACGTTCCGGAAAAAGAGTCCATCGTGGACAACGGGGCGCACTTTGACCCGTTACCGGGGACCACCAACAGCATTATTCCGCCCGCTGTGCAGCATCTGACAGTCAGCACGGATAACGACAGTACCCTGTATCAGGCCAAAGCGAAGTGGGGCACGCCGCGGGTGGTAAAAGATGTGCGTTTTGTGGTGAGGCTGACCACAGGCAGTGGGAACGAGGGCGATCCGGTTCGTCTGGTGACAACGGCGACGACCAGCGAAACGGAGTACGCCTTCCACGAACTGCCACTGGGTGACTACACGCTGACAGTCAGGGCAATAAACGGTTACGGGCAGCAGGGTGAACCGGCGTCCGTGGCATTCAGTATTCAGGCACCGGAAGCGCCATCCACGATTGAGATGACGCCGGGTTATTTTCAGATAACGGTGACGCCGCACCAGACTGTCTACGATGCCAGTGTGCAGTATGAGTTCTGGTACTCCGCCACGCAACTGGCGACTGCCGCCGATATTCAGTCAAAAGCACAGTATCTGGGCGTCGGGTCATTCTGGATAAAGGATGGACTGAAACCACTGCATGATGCCTGGTTTTACGTGCGCAGTGTAAATCTGGCTGGAAAATCAGTATTTGCGGAAGCATCCGGACGTCCGGGGATGACGCGAAAGGGTATCTGGATTTTTTTAAGGGACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
6d9327762b25b0dd0e89280e2223286e07089092ef5fd21e1a13f1f0652f985c
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3257
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Refined annotation of the phage genomes integrated into the Salmonella typhimurium LT2 genome Lingohr,E.J., Villegas,A. and Kropinski,A.M. 2010-11-24 — GenBank